FC-AZ18
Library FC
(Link to library)
Clone ID FC-AZ18
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15678-1
Original site URL
Representative seq. ID FC-AZ18Z
(Link to Original site)
Representative DNA sequence
>FC-AZ18 (FC-AZ18Q) /CSM/FC/FC-AZ/FC-AZ18Q.Seq.d/
XXXXXXXXXXCTTTTAGGTTCAATTGAAAATTTCTCAAAGGGTGGACTTAAAAAGACAGT
TACAGTTGATAAAAGCGCTGGTGTACCAACAAAAACCACACCATCTGCAAATTCAGCTGC
CAGCAATGCTGGATCAGAGCCATCATCAGGCGGTTCAACACCAGCACCAGCTCCAAAATC
TAGCGGTGGTGGTGGCGGTGGTGATTTAATGGCCGAAGTTATGGCCAAGAGAGCCAAAAT
GAAGGCAGCAGCATCTCAACCAAAAGAAGAATCATCAGCACCAACTCCAGCACCAACTCC
AGCACCAACTCCAGCACCAACCCCATCATCAACATCTTTCAAACCACCACAATCATTCAG
TAAACCAGCAACTAAAACAGCTGCTGCAAACAAACCACCTTCACCATCCTTATCAGCTCC
ACTCCCATCAACTGTAGCCAATGAAGATTTACAATCACTCAAAGAAGAAATTTTAACTGA
AGTTAGAAAGGAAATTCAAAAAGCTAAAGATGAAATTTTAGAAGCAATCAGAGCATCTCA
ACATTAAATTAATACTTTAATGGGCGAATGAGTTAAATGATTTCTTTCAAAAAAAAAA
sequence update 1997. 6.12
Translated Amino Acid sequence
---LGSIENFSKGGLKKTVTVDKSAGVPTKTTPSANSAASNAGSEPSSGGSTPAPAPKSS
GGGGGGDLMAEVMAKRAKMKAAASQPKEESSAPTPAPTPAPTPAPTPSSTSFKPPQSFSK
PATKTAAANKPPSPSLSAPLPSTVANEDLQSLKEEILTEVRKEIQKAKDEILEAIRASQH
*intlmge*vk*flskkk


Translated Amino Acid sequence (All Frames)
Frame A:
---f*vqlkisqrvdlkrqlqlikalvyqqkphhlqiqlpamldqshhqavqhqhqlqnl
avvvavvi*wpklwprepk*rqqhlnqkknhqhqlqhqlqhqlqhqphhqhlsnhhnhsv
nqqlkqllqtnhlhhpyqlhshql*pmkiynhskkkf*lklerkfkklkmkf*kqsehln
iklil*wanelndffqkk


Frame B:
---frfn*kflkgwt*kdsys**krwctnknhtickfscqqcwiraiirrfntstsski*
rwwwrw*fngrsygqesqnegssistkrriistnsstnsstnsstnpiinifqtttiiq*
tsn*nscckqttftilisstpincsq*rftitqrrnfn*s*kgnsks*r*nfrsnqsist
ln*yfngrms*misfkkk


Frame C:
---LGSIENFSKGGLKKTVTVDKSAGVPTKTTPSANSAASNAGSEPSSGGSTPAPAPKSS
GGGGGGDLMAEVMAKRAKMKAAASQPKEESSAPTPAPTPAPTPAPTPSSTSFKPPQSFSK
PATKTAAANKPPSPSLSAPLPSTVANEDLQSLKEEILTEVRKEIQKAKDEILEAIRASQH
*intlmge*vk*flskkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AZ18 (FC-AZ18Q) /CSM/FC/FC-AZ/FC-AZ18Q.Seq.d/ 1146 0.0
FC-209 (FC-209Q) /CSM/CG/CG-FC/FC-209Q.Seq.d/ 1146 0.0
SLH329 (SLH329Q) /CSM/SL/SLH3-B/SLH329Q.Seq.d/ 1138 0.0
SLC230 (SLC230Q) /CSM/SL/SLC2-B/SLC230Q.Seq.d/ 1138 0.0
FC-AL12 (FC-AL12Q) /CSM/FC/FC-AL/FC-AL12Q.Seq.d/ 1134 0.0
SSH374 (SSH374Q) /CSM/SS/SSH3-D/SSH374Q.Seq.d/ 1108 0.0
AFO838 (AFO838Q) /CSM/AF/AFO8-B/AFO838Q.Seq.d/ 1082 0.0
AFK259 (AFK259Q) /CSM/AF/AFK2-C/AFK259Q.Seq.d/ 1078 0.0
FC-BD13 (FC-BD13Q) /CSM/FC/FC-BD/FC-BD13Q.Seq.d/ 1076 0.0
AFG225 (AFG225Q) /CSM/AF/AFG2-B/AFG225Q.Seq.d/ 1072 0.0

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL205967|AL205967.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 152K16 of library G from Tetraodon nigroviridis. 56 8e-09 3
AW306469|AW306469.1 se51b09.y1 Gm-c1017 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1017-2418 5', mRNA sequence. 34 6e-04 3
BF008963|BF008963.1 ss71e08.y1 Gm-c1062 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1062-1887 5' similar to TR:Q9S740 Q9S740 F14K14.17 PROTEIN. ;, mRNA sequence. 34 0.001 3
AI899992|AI899992.1 sb97c10.y1 Gm-c1012 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1012-619 5', mRNA sequence. 34 0.001 3
AW394993|AW394993.1 sh38b07.y1 Gm-c1017 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1017-3950 5', mRNA sequence. 34 0.001 3
AC120770|AC120770.4 Rattus norvegicus clone CH230-204F23, WORKING DRAFT SEQUENCE, 1 ordered piece. 54 0.001 3
AQ501049|AQ501049.1 V28E12 mTn-3xHA/lacZ Insertion Library Saccharomyces cerevisiae genomic 5', genomic survey sequence. 34 0.001 3
AI759854|AI759854.1 sb65b12.y1 Gm-c1017 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1017-216 5', mRNA sequence. 34 0.001 3
AF479982|AF479982.1 Saccharomyces cerevisiae YPL283W-A gene, complete cds. 34 0.001 3
AF479970|AF479970.1 Saccharomyces cerevisiae YML133W-A gene, complete cds. 34 0.001 3
dna update 2003. 7.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY007501_1(AY007501|pid:none) Hirudo medicinalis enabled-like pr... 42 0.012
X98534_1(X98534|pid:none) H.sapiens VASP gene, exons 4 to 13 and... 40 0.046
(P50552) RecName: Full=Vasodilator-stimulated phosphoprotein; ... 40 0.046
BC026019_1(BC026019|pid:none) Homo sapiens vasodilator-stimulate... 40 0.046
(P50551) RecName: Full=Vasodilator-stimulated phosphoprotein; ... 40 0.046
A84509_1(A84509|pid:none) Sequence 124 from Patent WO9845704. &... 40 0.046
(Q2TA49) RecName: Full=Vasodilator-stimulated phosphoprotein; ... 40 0.046
(Q5R896) RecName: Full=Ena/VASP-like protein; AltName: Full=Ena/... 39 0.10
(P70460) RecName: Full=Vasodilator-stimulated phosphoprotein; ... 39 0.13
X98475_1(X98475|pid:none) M.musculus VASP gene. 39 0.13
protein update 2009. 4.14
PSORT

psg: 0.67 gvh: 0.40 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: mitochondrial
28.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for FC-AZ18 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AZ18Z
3' end seq.
>FC-AZ18Z.Seq
----------CTTTTAGGTTCAATTGAAAATTTCTCAAAGGGTGGACTTAAAAAGACAGT
TACAGTTGATAAAAGCGCTGGTGTACCAACAAAAACCACACCATCTGCAAATTCAGCTGC
CAGCAATGCTGGATCAGAGCCATCATCAGGCGGTTCAACACCAGCACCAGCTCCAAAATC
TAGCGGTGGTGGTGGCGGTGGTGATTTAATGGCCGAAGTTATGGCCAAGAGAGCCAAAAT
GAAGGCAGCAGCATCTCAACCAAAAGAAGAATCATCAGCACCAACTCCAGCACCAACTCC
AGCACCAACTCCAGCACCAACCCCATCATCAACATCTTTCAAACCACCACAATCATTCAG
TAAACCAGCAACTAAAACAGCTGCTGCAAACAAACCACCTTCACCATCCTTATCAGCTCC
ACTCCCATCAACTGTAGCCAATGAAGATTTACAATCACTCAAAGAAGAAATTTTAACTGA
AGTTAGAAAGGAAATTCAAAAAGCTAAAGATGAAATTTTAGAAGCAATCAGAGCATCTCA
ACATTAAATTAATACTTTAATGGGCGAATGAGTTAAATGATTTCTTTCAAAAAAAAAA
Length of 3' end seq. 588
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -