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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AX18
Library FC
(Link to library)
Clone ID FC-AX18
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15161-1
Original site URL
Representative seq. ID FC-AX18E
(Link to Original site)
Representative DNA sequence 
>FC-AX18 (FC-AX18Q) /CSM/FC/FC-AX/FC-AX18Q.Seq.d/
AAAACTCAAAAAAAAAAAAAAAATGACAACAAAAATAGTTGAAGAAGGATATTGGTTTTC
AAAAATCCCTTCAAAAAGATGGGCTGAAAAATTCTTTTTATTCTACAGTCCAGTTTGGAT
CACCGTATTTTCATTAATCGTTGCAACTGGTGCTTATAAAAGTTTTTATGATGTTGAATT
TTTTATTTTAGGTCTTGTTGTTTCATTGCCATGTGTGATTTATCCATTATTATTCCCATG
TGCAGCAGATAAAGGTAAACCAATTTTAGAGAGATATTGGGTTAAAGCAAATATTTGGAT
TGCATTATTTGGATTTGTTGGAAATTATTTTTGGACACATTACTTTTTCGTTTTATTACA
AGCAACTTATAGATTTCCAGTTGAATTCAAATTGAATGAGGTACCAGTAATGCTTTATTT
TGTAACTCATGCATATTTCATTAGTTATCATGCTGCAACTACACCAATTTTACGTCGTTA
TTGGACTGCATTTGGTGGTCGTGATAATCGTACCTTTTTAAAGACTGTTGGTTCAATTTT
GATCGTTTGTGCTATGGCTTATTTCACTGCTTTCATGGAAGCATGGACTATTAGTTCTGT
ACCATACTATCATATTGAAGATCGTACTAAAATGTATACAATCGGTTCAACTTTTTACAT
GTTATACTTTGTAATCTCTTTCCCAATGTTTGCCCGTATTGATGAGACTGGTCCAAAACA
TAATGAAAAATGGAATATTTCACGTGCTGCTTTAGAAGGTTTAGGTAGTGCTATGATCGT
TTTCATTTTATGTGATTTTTGGAGACTTGCAATTGGTTCATTAAATGGTGAACAAGTTGG
TCAAGTTTTTATTGGTAAAAGTGGTGTTTAAATGAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
sequence update 1997. 5.31
Translated Amino Acid sequence 
KLKKKKKMTTKIVEEGYWFSKIPSKRWAEKFFLFYSPVWITVFSLIVATGAYKSFYDVEF
FILGLVVSLPCVIYPLLFPCAADKGKPILERYWVKANIWIALFGFVGNYFWTHYFFVLLQ
ATYRFPVEFKLNEVPVMLYFVTHAYFISYHAATTPILRRYWTAFGGRDNRTFLKTVGSIL
IVCAMAYFTAFMEAWTISSVPYYHIEDRTKMYTIGSTFYMLYFVISFPMFARIDETGPKH
NEKWNISRAALEGLGSAMIVFILCDFWRLAIGSLNGEQVGQVFIGKSGV*mkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ktqkkkkndnkns*rrilvfknpfkkmg*kilfilqssldhrifinrcnwcl*kfl*c*i
fyfrsccfiamcdlsiiipmcsr*r*tnfreilg*skyldciiwicwklfldtllfrfit
snl*iss*iqie*gtsnalfcnscifh*lsccnytnftslldciwws**sylfkdcwfnf
drlcyglfhcfhgsmdy*fctilsy*rsy*nvynrfnflhvilcnlfpnvcpy**dwskt
**kmeyftccfrrfr*cydrfhfm*fletcnwfikw*tswssfyw*kwclnekkkkkkkk


Frame B:
KLKKKKKMTTKIVEEGYWFSKIPSKRWAEKFFLFYSPVWITVFSLIVATGAYKSFYDVEF
FILGLVVSLPCVIYPLLFPCAADKGKPILERYWVKANIWIALFGFVGNYFWTHYFFVLLQ
ATYRFPVEFKLNEVPVMLYFVTHAYFISYHAATTPILRRYWTAFGGRDNRTFLKTVGSIL
IVCAMAYFTAFMEAWTISSVPYYHIEDRTKMYTIGSTFYMLYFVISFPMFARIDETGPKH
NEKWNISRAALEGLGSAMIVFILCDFWRLAIGSLNGEQVGQVFIGKSGV*mkkkkkkkkk


Frame C:
nskkkkk*qqk*lkkdigfqkslqkdglknsfystvqfgspyfh*slqlvlikvfmmlnf
lf*vllfhchv*fihyyshvqqikvnqf*rdiglkqifglhyldlleiifghitfsfyyk
qlidfqlnsn*mryq*cfil*lmhislvimlqlhqfyvviglhlvvviivpf*rllvqf*
sfvlwlisllswkhgllvlyhtiilkivlkciqsvqlftcytl*slsqclpvlmrlvqni
mkngifhvll*kv*vvl*sfsfyvifgdlqlvh*mvnklvkfllvkvvfk*kkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AX18 (FC-AX18Q) /CSM/FC/FC-AX/FC-AX18Q.Seq.d/                     1687   0.0
SSF510 (SSF510Q) /CSM/SS/SSF5-A/SSF510Q.Seq.d/                       1302   0.0
VFF207 (VFF207Q) /CSM/VF/VFF2-A/VFF207Q.Seq.d/                       1132   0.0
VSH681 (VSH681Q) /CSM/VS/VSH6-D/VSH681Q.Seq.d/                        848   0.0
VSI503 (VSI503Q) /CSM/VS/VSI5-A/VSI503Q.Seq.d/                         40   0.057
VSG781 (VSG781Q) /CSM/VS/VSG7-D/VSG781Q.Seq.d/                         40   0.057
VSF733 (VSF733Q) /CSM/VS/VSF7-B/VSF733Q.Seq.d/                         40   0.057
VSD872 (VSD872Q) /CSM/VS/VSD8-C/VSD872Q.Seq.d/                         40   0.057
SSM642 (SSM642Q) /CSM/SS/SSM6-B/SSM642Q.Seq.d/                         40   0.057
SSE453 (SSE453Q) /CSM/SS/SSE4-C/SSE453Q.Seq.d/                         40   0.057
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    32   3e-04  14
BM309630|BM309630.1 sak64g11.y1 Gm-c1036 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1036-7990 5', mRNA sequence.    50   0.053  1
BE474207|BE474207.1 sp60d09.y1 Gm-c1044 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1044-330 5', mRNA sequence.    50   0.053  1
BM886017|BM886017.1 sam11a05.y1 Gm-c1063 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1063-5025 5', mRNA sequence.    50   0.053  1
BI892642|BI892642.1 saf36b07.y4 Gm-c1077 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1077-469 5', mRNA sequence.    50   0.053  1
AC142364|AC142364.3 Rattus norvegicus clone CH230-227K1, WORKING DRAFT SEQUENCE, 53 unordered pieces.    34   0.074  9
AC112644|AC112644.3 Homo sapiens 3 BAC RP11-10O22 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    32   0.14   9
AC104640|AC104640.3 Homo sapiens 3 BAC RP11-809F4 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    30   0.16   12
AC006278|AC006278.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    32   0.21   11
AX348405|AX348405.1 Sequence 100 from Patent WO0202806.            40   0.22   2
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC126782_12(AC126782|pid:none) Medicago truncatula clone mth2-14...   238   2e-61
AK221780_1(AK221780|pid:none) Arabidopsis thaliana mRNA for cycl...   236   1e-60
FJ360627_1(FJ360627|pid:none) Solanum lycopersicum cultivar San ...   233   9e-60
AC112208_8(AC112208|pid:none) Oryza sativa (japonica cultivar-gr...   216   6e-55
CP000584_455(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...   201   4e-50
BT052563_1(BT052563|pid:none) Medicago truncatula clone MTYFD_FE...   185   2e-45
CU638743_96(CU638743|pid:none) Podospora anserina genomic DNA ch...   106   1e-21
EF084486_1(EF084486|pid:none) Picea sitchensis clone WS02717_B16...    40   0.14
CP000499_81(CP000499|pid:none) Pichia stipitis CBS 6054 chromoso...    39   0.18
FM992693_96(FM992693|pid:none) Candida dubliniensis CD36 chromos...    39   0.24
protein update 2009. 7. 2
PSORT 

 psg: 0.70  gvh: 0.61  alm: 0.23  top: 0.27  tms: 0.27  mit: 0.19  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for FC-AX18 is end
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AX18E
Full length Seq. 
>FC-AX18E.Seq
AAAACTCAAAAAAAAAAAAAAAATGACAACAAAAATAGTTGAAGAAGGATATTGGTTTTC
AAAAATCCCTTCAAAAAGATGGGCTGAAAAATTCTTTTTATTCTACAGTCCAGTTTGGAT
CACCGTATTTTCATTAATCGTTGCAACTGGTGCTTATAAAAGTTTTTATGATGTTGAATT
TTTTATTTTAGGTCTTGTTGTTTCATTGCCATGTGTGATTTATCCATTATTATTCCCATG
TGCAGCAGATAAAGGTAAACCAATTTTAGAGAGATATTGGGTTAAAGCAAATATTTGGAT
TGCATTATTTGGATTTGTTGGAAATTATTTTTGGACACATTACTTTTTCGTTTTATTACA
AGCAACTTATAGATTTCCAGTTGAATTCAAATTGAATGAGGTACCAGTAATGCTTTATTT
TGTAACTCATGCATATTTCATTAGTTATCATGCTGCAACTACACCAATTTTACGTCGTTA
TTGGACTGCATTTGGTGGTCGTGATAATCGTACCTTTTTAAAGACTGTTGGTTCAATTTT
GATCGTTTGTGCTATGGCTTATTTCACTGCTTTCATGGAAGCATGGACTATTAGTTCTGT
ACCATACTATCATATTGAAGATCGTACTAAAATGTATACAATCGGTTCAACTTTTTACAT
GTTATACTTTGTAATCTCTTTCCCAATGTTTGCCCGTATTGATGAGACTGGTCCAAAACA
TAATGAAAAATGGAATATTTCACGTGCTGCTTTAGAAGGTTTAGGTAGTGCTATGATCGT
TTTCATTTTATGTGATTTTTGGAGACTTGCAATTGGTTCATTAAATGGTGAACAAGTTGG
TCAAGTTTTTATTGGTAAAAGTGGTGTTTAAATGAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
Length of full length seq. 902