>FC-AW08 (FC-AW08Q) /CSM/FC/FC-AW/FC-AW08Q.Seq.d/
XXXXXXXXXXCTTGTCCCATTTATTACCACTTATTAGATAAATACAGACCAGAAGAAGCC
TCAGTCAAGAAAGCTAGATTATTGAAAAATTCGCTGAAGCCCGTGCTGCCACTCCAAAAG
GTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACATACGTTACGGTATTGACTCTG
TCACCAATATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGAC
CCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTGT
ATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTT
GCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCC
AAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCT
GGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCC
AAATCAAAGATCTAAGCTCTTTAATAGTTTAGCGAGACTCTCACTCTTTTTTTAAATAAT
CAAATAAAATAAAGGTTCTTTAAAA

---CPIYYHLLDKYRPEEASVKKARLLKNSLKPVLPLQKVKLLQKLKNQSNTYVTVLTLS
PILIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVA
LTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLAK
SKI*al**fsetltlflnnqik*rffk

Frame A:
---lshllplir*iqtrrslsqes*iiekfaearaatpkgqaapkaekpvqhirygidsv
tninrkees*isrhcprc*ps*trliltnplqtygcpilyrqi*iqir*isshekrfmcc
phwcqlc*lkrtrfis*irqtnvqq*q*tqkdlgw*hfiwssscylsqtsks*sqrkfsq
ikdlssliv*rdshsffk*snkikvl*


Frame B:
---CPIYYHLLDKYRPEEASVKKARLLKNSLKPVLPLQKVKLLQKLKNQSNTYVTVLTLS
PILIEKKKAKLVVIAHDVDPVELVLYLPTLCRRMDVPYCIVKSKSRLGELVHMRNASCVA
LTGVNSADSNELALLVESAKQMFNNNSEHRKTWGGNTLSGPARAILAKRQKAEAKESLAK
SKI*al**fsetltlflnnqik*rffk


Frame C:
---vpfitty*intdqkkpqsrkldy*kir*spcchskrsscsks*ktspthtlry*lch
qy*skrrkln*sslptmltqlnssytyqpsadvwmshtvssnlnpd*vn*ft*etlhvlp
slvstlltqtnsly*lnppnkcstitvnterpgvvtlylvqlvls*pnvkklkpkkv*pn
qrsklfnslarlslff*iik*nkgslk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AW08 (FC-AW08Q) /CSM/FC/FC-AW/FC-AW08Q.Seq.d/                     1178   0.0
FC-BB05 (FC-BB05Q) /CSM/FC/FC-BB/FC-BB05Q.Seq.d/                     1084   0.0
FC-BB03 (FC-BB03Q) /CSM/FC/FC-BB/FC-BB03Q.Seq.d/                     1084   0.0
FC-AK02 (FC-AK02Q) /CSM/FC/FC-AK/FC-AK02Q.Seq.d/                     1084   0.0
FC-187 (FC-187Q) /CSM/CG/CG-FC/FC-187Q.Seq.d/                        1084   0.0
FC-BL19 (FC-BL19Q) /CSM/FC/FC-BL/FC-BL19Q.Seq.d/                     1076   0.0
FC-BQ11 (FC-BQ11Q) /CSM/FC/FC-BQ/FC-BQ11Q.Seq.d/                     1070   0.0
FC-AQ10 (FC-AQ10Q) /CSM/FC/FC-AQ/FC-AQ10Q.Seq.d/                     1066   0.0
VHC562 (VHC562Q) /CSM/VH/VHC5-C/VHC562Q.Seq.d/                       1061   0.0
FC-BR03 (FC-BR03Q) /CSM/FC/FC-BR/FC-BR03Q.Seq.d/                     1053   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116100|AC116100.2 Dictyostelium discoideum chromosome 2 map 6163571-6199719 strain AX4, complete sequence.   668  0.0  5
BQ476680|BQ476680.1 curculio4h01.g Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 3', mRNA sequence.    54  5e-09  3
BQ476431|BQ476431.1 curculio4h01.b Curculio glandium cDNA Curculio glandium cDNA clone curculio4h01 5', mRNA sequence.    54  7e-07  2
BQ623728|BQ623728.1 USDA-FP_00819 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00819 5', mRNA sequence.    56  8e-06  2
CA755632| (Y15171) ribosomal protein L7a [Takifugu rubripes], mRNA sequence.    60  3e-05  1
CA845440|CA845440.1 hab99h11.y1 Fugu hgmpD adult gut Takifugu rubripes cDNA clone IMAGE:6356972 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  4e-04  2
CA330639|CA330639.1 hab08d06.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362938 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  5e-04  2
CA846589|CA846589.1 hab83c10.y1 Fugu hgmpC adult gill Takifugu rubripes cDNA clone IMAGE:6355194 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  5e-04  2
CA330747|CA330747.1 haa65h09.y2 Fugu hgmpF adult brain Takifugu rubripes cDNA clone 6358888 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  6e-04  2
CA330317|CA330317.1 hab04g11.y1 Fugu hgmpJ adult kidney Takifugu rubripes cDNA clone 6362708 5' similar to SW:RL7A_FUGRU O57592 60S RIBOSOMAL PROTEIN L7A ;, mRNA sequence.    46  6e-04  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZD1) RecName: Full=60S ribosomal protein L7a;                     237   2e-61
CR940348_866(CR940348|pid:none) Theileria annulata strain Ankara...   138   1e-31
AY769275_1(AY769275|pid:none) Bombyx mori ribosomal protein L7A ...   136   5e-31
EU124958_1(EU124958|pid:none) Arenicola marina ribosomal protein...   132   8e-30
EU259814_1(EU259814|pid:none) Spodoptera exigua ribosomal protei...   130   3e-29
EF146643_1(EF146643|pid:none) Populus trichocarpa clone WS01211_...   129   5e-29
DQ440224_1(DQ440224|pid:none) Aedes aegypti clone AET-254 riboso...   129   6e-29
AY961486_1(AY961486|pid:none) Lysiphlebus testaceipes ribosomal ...   129   6e-29
BC122243_1(BC122243|pid:none) Danio rerio zgc:153325, mRNA (cDNA...   129   8e-29
AY674243_1(AY674243|pid:none) Ixodes pacificus clone IP_7_60_92_...   128   1e-28

 psg: 0.50  gvh: 0.37  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: cytoplasmic
	 20.0 %: mitochondrial

>> prediction for FC-AW08 is cyt

>FC-AW08Z.Seq
----------CTTGTCCCATTTATTACCACTTATTAGATAAATACAGACCAGAAGAAGCC
TCAGTCAAGAAAGCTAGATTATTGAAAAATTCGCTGAAGCCCGTGCTGCCACTCCAAAAG
GTCAAGCTGCTCCAAAAGCTGAAAAACCAGTCCAACACATACGTTACGGTATTGACTCTG
TCACCAATATTAATCGAAAAGAAGAAAGCTAAATTAGTCGTCATTGCCCACGATGTTGAC
CCAGTTGAACTCGTCTTATACTTACCAACCCTCTGCAGACGTATGGATGTCCCATACTGT
ATCGTCAAATCTAAATCCAGATTAGGTGAATTAGTTCACATGAGAAACGCTTCATGTGTT
GCCCTCACTGGTGTCAACTCTGCTGACTCAAACGAACTCGCTTTATTAGTTGAATCCGCC
AAACAAATGTTCAACAATAACAGTGAACACAGAAAGACCTGGGGTGGTAACACTTTATCT
GGTCCAGCTCGTGCTATCTTAGCCAAACGTCAAAAAGCTGAAGCCAAAGAAAGTTTAGCC
AAATCAAAGATCTAAGCTCTTTAATAGTTTAGCGAGACTCTCACTCTTTTTTTAAATAAT
CAAATAAAATAAAGGTTCTTTAAAA