FC-AW02
Library FC
(Link to library)
Clone ID FC-AW02
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16151-1
Original site URL
Representative seq. ID FC-AW02F
(Link to Original site)
Representative DNA sequence
>FC-AW02 (FC-AW02Q) /CSM/FC/FC-AW/FC-AW02Q.Seq.d/
ATGAGACTTCTTATTTCATGTATTTTAATACTTTCAATTTTGGTAAACTTTATCAGTGGT
CATGCTGTTTTAGTGGCACCAACCCCATTTTCTACCAACCCAAGTAAAACTAAACTATGT
GGTGGTGGTACAAAACAAACTGTTGCACAAATTACTTGGTGTCCAAACTCAAGCAAAACA
AACAGAGCCACATGGAAAATTGTTGTTGGTGATGGTGCAGGTGCAGTCACATTTAAATTA
GCAACTAATGGTGGAACAACAGAAGGTGATTTCACTACCACATTAACAAGTAAAGTTCTT
TCAGGTAGTGATCCAAAGGAAGTTGGAACTTATTATATGGATGTCACAGTTCCAACTGGT
ACCACATGCACAGGTACCAATGGTATTTGTACACTCCAAGCCTACACAGAAAGCAGTGGT
TGGTATTCATGCTCAGCTATTAAACTTGACTCAAGTGCTTGTGATAAAGCAGCAGAAGAA
ACCGCTTTGGTCGAATACAATGTCCAAGTTAAAGATAATGTCAAATTCTGTGATCAAGTT
GTCAACAAAGTTGTTTTACTCCCAGCCGGTACACCAXXXXXXXXXXTTTTTTTTTTTTTT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
sequence update 1997. 5.20
Translated Amino Acid sequence
MRLLISCILILSILVNFISGHAVLVAPTPFSTNPSKTKLCGGGTKQTVAQITWCPNSSKT
NRATWKIVVGDGAGAVTFKLATNGGTTEGDFTTTLTSKVLSGSDPKEVGTYYMDVTVPTG
TTCTGTNGICTLQAYTESSGWYSCSAIKLDSSACDKAAEETALVEYNVQVKDNVKFCDQV
VNKVVLLPAGTP---

---FFFFFKKKKKKKKKKKKKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
MRLLISCILILSILVNFISGHAVLVAPTPFSTNPSKTKLCGGGTKQTVAQITWCPNSSKT
NRATWKIVVGDGAGAVTFKLATNGGTTEGDFTTTLTSKVLSGSDPKEVGTYYMDVTVPTG
TTCTGTNGICTLQAYTESSGWYSCSAIKLDSSACDKAAEETALVEYNVQVKDNVKFCDQV
VNKVVLLPAGTP---

---FFFFFKKKKKKKKKKKKKKKKKKKKKKKK

Frame B:
*dflfhvf*yfqfw*tlsvvmlf*whqphflptqvklnyvvvvqnkllhkllgvqtqakq
tephgklllvmvqvqshln*qlmveqqkvislph*qvkffqvviqrkleliiwmsqfqlv
phaqvpmvfvhskptqkavvgihaqllnltqvlvikqqkkplwsntmsklkimsnsvikl
stklfysqpvh---

---fffflkkkkkkkkkkkkkkkkkkkkkkk

Frame C:
etsyfmyfntfnfgklyqwsccfsgtnpifyqpk*n*tmwwwyktncctnylvsklkqnk
qshmenccw*wcrcshi*isn*wwnnrr*fhyhink*ssfr**skgswnllygchssnwy
hmhryqwylytpslhrkqwlvfmlsy*t*lkcl**ssrrnrfgriqcps*r*cqil*ssc
qqscftpsryt---

---ffff*kkkkkkkkkkkkkkkkkkkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AW02 (FC-AW02Q) /CSM/FC/FC-AW/FC-AW02Q.Seq.d/ 1142 0.0
FC-245 (FC-245Q) /CSM/CG/CG-FC/FC-245Q.Seq.d/ 1138 0.0
VSK140 (VSK140Q) /CSM/VS/VSK1-B/VSK140Q.Seq.d/ 1130 0.0
VHJ339 (VHJ339Q) /CSM/VH/VHJ3-B/VHJ339Q.Seq.d/ 1130 0.0
FC-AN19 (FC-AN19Q) /CSM/FC/FC-AN/FC-AN19Q.Seq.d/ 1126 0.0
VFH641 (VFH641Q) /CSM/VF/VFH6-B/VFH641Q.Seq.d/ 1116 0.0
VHG376 (VHG376Q) /CSM/VH/VHG3-D/VHG376Q.Seq.d/ 999 0.0
VFD405 (VFD405Q) /CSM/VF/VFD4-A/VFD405Q.Seq.d/ 987 0.0
VFG184 (VFG184Q) /CSM/VF/VFG1-D/VFG184Q.Seq.d/ 908 0.0
VFC290 (VFC290Q) /CSM/VF/VFC2-D/VFC290Q.Seq.d/ 692 0.0

own update 2003.10.31
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence. 42 0.010 2
AC083882|AC083882.2 Homo sapiens chromosome UL clone RP11-752B12, WORKING DRAFT SEQUENCE, 18 unordered pieces. 34 0.041 4
AF310892|AF310892.1 Dictyostelium discoideum citrate synthase (gltA) gene, partial cds; RacF2 (racF2) gene, complete cds; and unknown gene. 42 0.067 2
AP003717|AP003717.3 Homo sapiens genomic DNA, chromosome 11q clone:RP11-167N4, complete sequences. 44 0.079 3
AL845503|AL845503.5 Mouse DNA sequence from clone RP23-292G16 on chromosome 2. 44 0.086 4
AC109129|AC109129.3 Homo sapiens 3 BAC RP11-784B9 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 34 0.14 4
AC107243|AC107243.5 Rattus norvegicus clone CH230-39N2, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 0.14 2
AP001855|AP001855.4 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-892C3. 38 0.16 4
CC267319|CC267319.1 CH261-30A18_RM1.1 CH261 Gallus gallus genomic clone CH261-30A18, DNA sequence. 40 0.21 2
AP005790|AP005790.2 Homo sapiens genomic DNA, chromosome 8q24, clone: KB232A8, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 0.29 2
dna update 2003. 7.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54UI0) RecName: Full=Uncharacterized transmembrane protein DDB... 284 1e-75
AE007870_217(AE007870|pid:none) Agrobacterium tumefaciens str. C... 33 5.7

protein update 2009. 4.13
PSORT

psg: 0.97 gvh: 0.70 alm: 0.37 top: 0.43 tms: 0.00 mit: 0.47 mip: 0.11
nuc: 1.69 erl: 0.00 erm: 1.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for FC-AW02 is nuc

5' end seq. ID FC-AW02F
5' end seq.
>FC-AW02F.Seq
ATGAGACTTCTTATTTCATGTATTTTAATACTTTCAATTTTGGTAAACTTTATCAGTGGT
CATGCTGTTTTAGTGGCACCAACCCCATTTTCTACCAACCCAAGTAAAACTAAACTATGT
GGTGGTGGTACAAAACAAACTGTTGCACAAATTACTTGGTGTCCAAACTCAAGCAAAACA
AACAGAGCCACATGGAAAATTGTTGTTGGTGATGGTGCAGGTGCAGTCACATTTAAATTA
GCAACTAATGGTGGAACAACAGAAGGTGATTTCACTACCACATTAACAAGTAAAGTTCTT
TCAGGTAGTGATCCAAAGGAAGTTGGAACTTATTATATGGATGTCACAGTTCCAACTGGT
ACCACATGCACAGGTACCAATGGTATTTGTACACTCCAAGCCTACACAGAAAGCAGTGGT
TGGTATTCATGCTCAGCTATTAAACTTGACTCAAGTGCTTGTGATAAAGCAGCAGAAGAA
ACCGCTTTGGTCGAATACAATGTCCAAGTTAAAGATAATGTCAAATTCTGTGATCAAGTT
GTCAACAAAGTTGTTTTACTCCCAGCCGGTACACCA----------
Length of 5' end seq. 576
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -