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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AV24
Library FC
(Link to library)
Clone ID FC-AV24
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16482-1
Original site URL
Representative seq. ID FC-AV24E
(Link to Original site)
Representative DNA sequence 
>FC-AV24 (FC-AV24Q) /CSM/FC/FC-AV/FC-AV24Q.Seq.d/
ATTCAGAATGCCTATCCACGAATTCCAAGTTGTTGGTCGTCACGTTCCAACTGAAAGAGA
TGCAAACCCAAAAATCTACAGAATGAGACTCTTTGCTCAAACCTCAATCCACGCTAAGAG
CCGTTTCTGGTATTTCTTATCAAAGATTGTTAAGATGAAGAAATCCACTGGTGAAATCCT
CAACGTCACTGAAATCTTTGAAGATAAACCACAAAAAGTTAAGAACTTTGGTGTATTCAT
CAGATACAACTCTAGATCTGGTACCCACAACATCTACAAGGAATACAGAGATCTCACTCG
TTGTGGTGCTGTTTCTCAAATGTACGACGAAATGGCCTCACGTCACTCTGCTCGTGAATC
ATCCATCCATATCATTGATATCAAGGAAATCGCCGCCTCATTAACCAGACGTGCCAACAC
TAAACAATTCCACGATTCAAAGATTAAATTCCCATTAACTCACAGAATTGCTAAATCAAA
ATCAACCTTTGTTGCCAACAGACCAAATACCTTCTTCTGTTAAATTTAGATTTTAGGTGC
CATATATACTAAATAAAAGGGATAGTTATTTAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 5.12
Translated Amino Acid sequence 
FRMPIHEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEIL
NVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARES
SIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHRIAKSKSTFVANRPNTFFC*i*ilga
iytk*kg*lfkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iqnaypripscwssrsn*krckpknlqnetlcsnlnpr*epflvflikdc*deeihw*np
qrh*nl*r*ttks*elwcihqiql*iwypqhlqgiqrshslwccfsnvrrngltslcs*i
ihpyh*yqgnrrlinqtcqh*tiprfkd*ipinsqnc*ikinlccqqtkyllllnldfrc
hiy*ikgivi*kkkkkk


Frame B:
FRMPIHEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEIL
NVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARES
SIHIIDIKEIAASLTRRANTKQFHDSKIKFPLTHRIAKSKSTFVANRPNTFFC*i*ilga
iytk*kg*lfkkkkkk


Frame C:
seclstnskllvvtfqlkemqtqkste*dsllkpqstlravsgisyqrllr*rnplvkss
tslkslkinhkklrtlvyssdttldlvpttstrnteislvvvlflkcttkwphvtllvnh
psislisrkspph*pdvptlnnstiqrlnsh*ltellnqnqpllptdqipssvkfrf*vp
yilnkrdsylkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSB154 (VSB154Q) /CSM/VS/VSB1-C/VSB154Q.Seq.d/                       1132   0.0
FC-AV24 (FC-AV24Q) /CSM/FC/FC-AV/FC-AV24Q.Seq.d/                     1132   0.0
FC-123 (FC-123Q) /CSM/CG/CG-FC/FC-123Q.Seq.d/                        1132   0.0
VSE821 (VSE821Q) /CSM/VS/VSE8-A/VSE821Q.Seq.d/                       1128   0.0
VSE817 (VSE817Q) /CSM/VS/VSE8-A/VSE817Q.Seq.d/                       1124   0.0
VFN172 (VFN172Q) /CSM/VF/VFN1-C/VFN172Q.Seq.d/                       1124   0.0
SSG450 (SSG450Q) /CSM/SS/SSG4-C/SSG450Q.Seq.d/                       1124   0.0
VSH671 (VSH671Q) /CSM/VS/VSH6-C/VSH671Q.Seq.d/                       1118   0.0
VSI561 (VSI561Q) /CSM/VS/VSI5-C/VSI561Q.Seq.d/                       1114   0.0
VSI732 (VSI732Q) /CSM/VS/VSI7-B/VSI732Q.Seq.d/                       1112   0.0
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL397231|AL397231.1 T3 end of clone AS0AA001E06 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    68   4e-08  2
AL427914|AL427914.1 clone BA0AB022E06 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    62   2e-06  2
AX073154|AX073154.1 Sequence 265 from Patent WO0102550.            44   2e-06  4
Z75220|Z75220.1 S.cerevisiae chromosome XV reading frame ORF YOR312c.    44   6e-06  4
BI450418|BI450418.1 kt25d04.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL1X_HUMAN Q02543 60S RIBOSOMAL PROTEIN L18A. [1] ;, mRNA sequence.    56   1e-05  2
BG301484|BG301484.1 kt01g02.y1 Strongyloides ratti L1 SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL1X_HUMAN Q02543 60S RIBOSOMAL PROTEIN L18A. [1] ;, mRNA sequence.    56   2e-05  2
BG301945|BG301945.1 kt07e05.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL1X_SALSA O57561 60S RIBOSOMAL PROTEIN L18A. ;, mRNA sequence.    56   2e-05  2
BI450995|BI450995.1 kt80d02.y4 Strongyloides ratti L2 SL1 TOPO v2 Strongyloides ratti cDNA 5' similar to SW:RL1X_HUMAN Q02543 60S RIBOSOMAL PROTEIN L18A. [1] ;, mRNA sequence.    56   2e-05  2
BI450863|BI450863.1 kt78f04.y4 Strongyloides ratti L2 SL1 TOPO v2 Strongyloides ratti cDNA 5' similar to SW:RL1X_HUMAN Q02543 60S RIBOSOMAL PROTEIN L18A. [1] ;, mRNA sequence.    56   2e-05  2
BG301880|BG301880.1 kt06f01.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL1X_HUMAN Q02543 60S RIBOSOMAL PROTEIN L18A. [1] ;, mRNA sequence.    56   2e-05  2
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54MK8) RecName: Full=60S ribosomal protein L18a;                    348   8e-95
(Q02543) RecName: Full=60S ribosomal protein L18a;  &(Q3T003) Re...   203   3e-51
AK222647_1(AK222647|pid:none) Homo sapiens mRNA for ribosomal pr...   203   3e-51
(P62717) RecName: Full=60S ribosomal protein L18a;  &(P62718) Re...   201   9e-51
EF146275_1(EF146275|pid:none) Populus trichocarpa clone WS0116_L...   199   4e-50
EF144371_1(EF144371|pid:none) Populus trichocarpa clone PX0019_B...   199   5e-50
AY857432_1(AY857432|pid:none) Suberites domuncula L18a mRNA, com...   199   5e-50
AJ009692_1(AJ009692|pid:none) Podocoryne carnea ribosomal protei...   198   8e-50
EF145016_1(EF145016|pid:none) Populus trichocarpa clone WS0111_I...   197   1e-49
EU124968_1(EU124968|pid:none) Arenicola marina ribosomal protein...   197   2e-49
protein update 2009. 7. 2
PSORT 

 psg: 0.68  gvh: 0.38  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for FC-AV24 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AV24E
Full length Seq. 
>FC-AV24E.Seq
ATTCAGAATGCCTATCCACGAATTCCAAGTTGTTGGTCGTCACGTTCCAACTGAAAGAGA
TGCAAACCCAAAAATCTACAGAATGAGACTCTTTGCTCAAACCTCAATCCACGCTAAGAG
CCGTTTCTGGTATTTCTTATCAAAGATTGTTAAGATGAAGAAATCCACTGGTGAAATCCT
CAACGTCACTGAAATCTTTGAAGATAAACCACAAAAAGTTAAGAACTTTGGTGTATTCAT
CAGATACAACTCTAGATCTGGTACCCACAACATCTACAAGGAATACAGAGATCTCACTCG
TTGTGGTGCTGTTTCTCAAATGTACGACGAAATGGCCTCACGTCACTCTGCTCGTGAATC
ATCCATCCATATCATTGATATCAAGGAAATCGCCGCCTCATTAACCAGACGTGCCAACAC
TAAACAATTCCACGATTCAAAGATTAAATTCCCATTAACTCACAGAATTGCTAAATCAAA
ATCAACCTTTGTTGCCAACAGACCAAATACCTTCTTCTGTTAAATTTAGATTTTAGGTGC
CATATATACTAAATAAAAGGGATAGTTATTTAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 591