FC-AV22
Library FC
(Link to library)
Clone ID FC-AV22
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16260-1
Original site URL
Representative seq. ID FC-AV22Z
(Link to Original site)
Representative DNA sequence
>FC-AV22 (FC-AV22Q) /CSM/FC/FC-AV/FC-AV22Q.Seq.d/
XXXXXXXXXXCGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATG
AAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTG
ATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCA
TCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAAT
TAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAA
ACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAG
AACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCTT
CGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTT
CGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTT
AGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGA
AAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAATATAGTAATCAAATCTAAAA
AAAATTTTAAAAAAAAAATAAT
sequence update 1997. 5.12
Translated Amino Acid sequence
---GANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAI
HRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEE
RRIGSPLFSVKAHLPVLESSVSPLIYVPTLPVKLSHNVSSIIGLQLVLSTKIRKPLKSL*
pperekv*pqksqiltnstknskqfkshfefsnivikskknfkkki


Translated Amino Acid sequence (All Frames)
Frame A:
---GANLLVNVTKGVQYLNEIKDSFVGAFQWATKEGVVCDENMRGIRFNLYDVTLHTDAI
HRGGGQIIPTARRVLYAAELTASPTLLEPIYLVEITAPENAIGGIYSVLNRRRGIVIGEE
RRIGSPLFSVKAHLPVLESSVSPLIYVPTLPVKLSHNVSSIIGLQLVLSTKIRKPLKSL*
pperekv*pqksqiltnstknskqfkshfefsnivikskknfkkki


Frame B:
---vpisssmspkvfni*mklkilslvlsngppkkvlfvmkt*evsvsifmmspstlmps
tevvvkssqllvvysmlln*lppqls*nqst**kllpqktllvvftlysivvevlllvkn
vvsvphyslskliyqy*nlrfhr*ftfphcrssfptmclrslgfnwccqqr*esh*srfs
hqkekrfsprnprs*qiprktlnnlsrtlsfqi**snlkkilkkk*


Frame C:
---cqsprqchqrcsife*n*rffrwcfpmghqrrccl**kherypfqsl*chpph*chp
qrwwsnhpncssctlcc*inclpnslrtnllsrnycprkrywwyllctqss*rycyw*rt
syrfpiilcqssftsirifgftadlrshtagqafpqcvfdhwasigvvnkdkkatevala
trkrkglapeipdldkfhekl*ti*val*vfkysnqi*kkf*kknn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AV22 (FC-AV22Q) /CSM/FC/FC-AV/FC-AV22Q.Seq.d/ 1281 0.0
FCL-AC01 (FCL-AC01Q) /CSM/FCL/FCL-AC/FCL-AC01Q.Seq.d/ 1273 0.0
SLH782 (SLH782Q) /CSM/SL/SLH7-D/SLH782Q.Seq.d/ 1267 0.0
SLE722 (SLE722Q) /CSM/SL/SLE7-A/SLE722Q.Seq.d/ 1267 0.0
SLE337 (SLE337Q) /CSM/SL/SLE3-B/SLE337Q.Seq.d/ 1267 0.0
VHP749 (VHP749Q) /CSM/VH/VHP7-C/VHP749Q.Seq.d/ 1261 0.0
VHO803 (VHO803Q) /CSM/VH/VHO8-A/VHO803Q.Seq.d/ 1261 0.0
VHO104 (VHO104Q) /CSM/VH/VHO1-A/VHO104Q.Seq.d/ 1261 0.0
VHI806 (VHI806Q) /CSM/VH/VHI8-A/VHI806Q.Seq.d/ 1261 0.0
VHD305 (VHD305Q) /CSM/VH/VHD3-A/VHD305Q.Seq.d/ 1261 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M26017|M26017.1 D.discoideum elongation factor 2 mRNA, complete cds. 803 0.0 3
AF107286|AF107286.1 Candida albicans elongation factor 2 (EFT2) gene, partial cds. 78 1e-36 4
Y09664|Y09664.1 C.albicans EFT2 gene. 78 2e-36 4
BI502325|BI502325.1 kt88b08.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:EF2_CAEEL P29691 ELONGATION FACTOR 2 ;, mRNA sequence. 133 5e-35 2
BW270068|BW270068.1 Ciona intestinalis cDNA, clone:cign055h19, 5' end, single read. 103 1e-34 4
AV986603|AV986603.1 Ciona intestinalis cDNA, clone:cilv42g15, 5' end, single read. 103 2e-34 4
AV842050|AV842050.1 Ciona intestinalis cDNA, clone:rcieg07b05, 3' end, single read. 103 2e-34 4
AF107289|AF107289.1 Candida tropicalis elongation factor 2 (EFT2) gene, partial cds. 70 3e-34 4
AV848177|AV848177.1 Ciona intestinalis cDNA, clone:rciad11b15, 3' end, single read. 103 3e-34 4
BW140238|BW140238.1 Ciona intestinalis cDNA, clone:rcign055h19, 3' end, single read. 103 3e-34 4
dna update 2003. 7.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY391422_1(AY391422|pid:none) Danio rerio eukaryotic translation... 190 2e-63
AY069933_1(AY069933|pid:none) Rana sylvatica eukaryotic translat... 191 1e-62
BC089730_1(BC089730|pid:none) Xenopus tropicalis MGC108369 prote... 189 2e-62
A40411(A40411) translation elongation factor eEF-2 - Caenorhabdi... 188 3e-62
AK032997_1(AK032997|pid:none) Mus musculus 12 days embryo male w... 185 1e-61
(P05197) RecName: Full=Elongation factor 2; Short=EF-2;... 185 1e-61
AK159514_1(AK159514|pid:none) Mus musculus osteoclast-like cell ... 185 1e-61
BC060707_1(BC060707|pid:none) Mus musculus eukaryotic translatio... 185 1e-61
AK298498_1(AK298498|pid:none) Homo sapiens cDNA FLJ56548 complet... 185 1e-61
AK161993_1(AK161993|pid:none) Mus musculus 12 days embryo male w... 185 1e-61
protein update 2009. 4.13
PSORT

psg: 0.67 gvh: 0.27 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for FC-AV22 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AV22Z
3' end seq.
>FC-AV22Z.Seq
----------CGGTGCCAATCTCCTCGTCAATGTCACCAAAGGTGTTCAATATTTGAATG
AAATTAAAGATTCTTTCGTTGGTGCTTTCCAATGGGCCACCAAAGAAGGTGTTGTTTGTG
ATGAAAACATGAGAGGTATCCGTTTCAATCTTTATGATGTCACCCTCCACACTGATGCCA
TCCACAGAGGTGGTGGTCAAATCATCCCAACTGCTCGTCGTGTACTCTATGCTGCTGAAT
TAACTGCCTCCCCAACTCTCTTAGAACCAATCTACTTAGTAGAAATTACTGCCCCAGAAA
ACGCTATTGGTGGTATTTACTCTGTACTCAATCGTCGTAGAGGTATTGTTATTGGTGAAG
AACGTCGTATCGGTTCCCCATTATTCTCTGTCAAAGCTCATTTACCAGTATTAGAATCTT
CGGTTTCACCGCTGATTTACGTTCCCACACTGCCGGTCAAGCTTTCCCACAATGTGTCTT
CGATCATTGGGCTTCAATTGGTGTTGTCAACAAAGATAAGAAAGCCACTGAAGTCGCTTT
AGCCACCAGAAAGAGAAAAGGTTTAGCCCCAGAAATCCCAGATCTTGACAAATTCCACGA
AAAACTCTAAACAATTTAAGTCGCACTTTGAGTTTTCAAATATAGTAATCAAATCTAAAA
AAAATTTTAAAAAAAAAATAAT
Length of 3' end seq. 672
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -