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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AV21
Library FC
(Link to library)
Clone ID FC-AV21
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15736-1
Original site URL
Representative seq. ID FC-AV21E
(Link to Original site)
Representative DNA sequence 
>FC-AV21 (FC-AV21Q) /CSM/FC/FC-AV/FC-AV21Q.Seq.d/
AGAACCAGTTAAAGTTGAAGAACCAGTTAAAGTTGAAGAACCAGTTAAGGTTGAAGAACC
AATTAAAGTTGAAGAACCAATTAAAGTTGAAGAACCAATTAAAGTTGAAGAACCAATTAA
AGTTGAAGAACCAATTAAGGTTGAAGAACCAGTTAAGGTTGAAGTTGCCTCACCAGTTGT
TCAAGAACAACCACCACAACAAGAAGAAAAACCAGAAGTCGTTTCAACTTCAACGATTAC
AATTGCATCATCACCACAACAATCATCTAATTCACCACCATCAACTCCGGTTAAACAACC
ACAACAACAAGAAATCGAAGTAAATTCAACTCCAATTAAACAACAACAACAACAACAACA
AACACCAACACAACAAACACAAACACCAACTAAACAACACACTGAAATTAATGTCCAACC
AACTCCAACTAAAACTCCACCATTACCACCTCAAACAAATGAAAAAATACCACTTATTTC
ACCAAATAATAAATCAAATAGAGGTTGTTGTTCCTGTTTCATCCAATAATCTCTGAAATT
AAAAATTAAAAATTCCAAAATTTTAATCTTGGAAATTAAAAATTCCAAATTTGGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 5.15
Translated Amino Acid sequence 
EPVKVEEPVKVEEPVKVEEPIKVEEPIKVEEPIKVEEPIKVEEPIKVEEPVKVEVASPVV
QEQPPQQEEKPEVVSTSTITIASSPQQSSNSPPSTPVKQPQQQEIEVNSTPIKQQQQQQQ
TPTQQTQTPTKQHTEINVQPTPTKTPPLPPQTNEKIPLISPNNKSNRGCCSCFIQ*slkl
kiknskilileiknskfgkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
rts*s*rts*s*rts*g*rtn*s*rtn*s*rtn*s*rtn*s*rtn*g*rts*g*scltsc
srtttttrrktrsrfnfndynciitttii*fttinsg*tttttrnrskfnsn*ttttttt
ntnttntntn*tth*n*cptnsn*nstittsnk*knttyftk**ik*rllflfhpiisei
kn*kfqnfnlgn*kfqiwkkkkkkkkkkkkk


Frame B:
EPVKVEEPVKVEEPVKVEEPIKVEEPIKVEEPIKVEEPIKVEEPIKVEEPVKVEVASPVV
QEQPPQQEEKPEVVSTSTITIASSPQQSSNSPPSTPVKQPQQQEIEVNSTPIKQQQQQQQ
TPTQQTQTPTKQHTEINVQPTPTKTPPLPPQTNEKIPLISPNNKSNRGCCSCFIQ*slkl
kiknskilileiknskfgkkkkkkkkkkkkk


Frame C:
nqlklknqlklknqlrlknqlklknqlklknqlklknqlklknqlrlknqlrlklphqlf
knnhhnkkknqksfqlqrlqlhhhhnnhlihhhqlrlnnhnnkksk*iqlqlnnnnnnnk
hqhnkhkhqlnntlklmsnqlqlklhhyhlkqmkkyhlfhqiinqievvvpvssnnl*n*
klkipkf*swklkipnlekkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AV21 (FC-AV21Q) /CSM/FC/FC-AV/FC-AV21Q.Seq.d/                      573   e-162
VHK407 (VHK407Q) /CSM/VH/VHK4-A/VHK407Q.Seq.d/                        571   e-162
AHO192 (AHO192Q) /CSM/AH/AHO1-D/AHO192Q.Seq.d/                        571   e-162
AHC813 (AHC813Q) /CSM/AH/AHC8-A/AHC813Q.Seq.d/                        571   e-162
AHL312 (AHL312Q) /CSM/AH/AHL3-A/AHL312Q.Seq.d/                        565   e-160
SHC704 (SHC704Q) /CSM/SH/SHC7-A/SHC704Q.Seq.d/                        533   e-150
SHF304 (SHF304Q) /CSM/SH/SHF3-A/SHF304Q.Seq.d/                        496   e-139
VSA870 (VSA870Q) /CSM/VS/VSA8-C/VSA870Q.Seq.d/                        381   e-105
SFD722 (SFD722Q) /CSM/SF/SFD7-A/SFD722Q.Seq.d/                        319   3e-86
SFH313 (SFH313Q) /CSM/SF/SFH3-A/SFH313Q.Seq.d/                        258   9e-68
own update 2002.10. 6
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z37981|Z37981.1 D.discoideum gene for protein kinase.             571   0.0    8
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   6e-06  13
AL132862|AL132862.1 Caenorhabditis elegans YAC Y73F8A.             38   7e-04  10
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    38   0.001  11
AC114261|AC114261.2 Dictyostelium discoideum chromosome 2 map 126059-159710 strain AX4, complete sequence.    30   0.002  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.004  14
AC146574|AC146574.6 Medicago truncatula clone mth2-145j21, complete sequence.    34   0.004  6
AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    32   0.004  9
AZ546545|AZ546545.1 ENTDQ33TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    32   0.006  4
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   0.008  12
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23915) RecName: Full=Probable serine/threonine-protein kinase ...    87   4e-16
protein update 2009. 3. 2
PSORT 

 psg: 0.75  gvh: 0.19  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.09  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: nuclear
	 20.0 %: plasma membrane
	 12.0 %: vesicles of secretory system
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for FC-AV21 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AV21E
Full length Seq. 
>FC-AV21E.Seq
AGAACCAGTTAAAGTTGAAGAACCAGTTAAAGTTGAAGAACCAGTTAAGGTTGAAGAACC
AATTAAAGTTGAAGAACCAATTAAAGTTGAAGAACCAATTAAAGTTGAAGAACCAATTAA
AGTTGAAGAACCAATTAAGGTTGAAGAACCAGTTAAGGTTGAAGTTGCCTCACCAGTTGT
TCAAGAACAACCACCACAACAAGAAGAAAAACCAGAAGTCGTTTCAACTTCAACGATTAC
AATTGCATCATCACCACAACAATCATCTAATTCACCACCATCAACTCCGGTTAAACAACC
ACAACAACAAGAAATCGAAGTAAATTCAACTCCAATTAAACAACAACAACAACAACAACA
AACACCAACACAACAAACACAAACACCAACTAAACAACACACTGAAATTAATGTCCAACC
AACTCCAACTAAAACTCCACCATTACCACCTCAAACAAATGAAAAAATACCACTTATTTC
ACCAAATAATAAATCAAATAGAGGTTGTTGTTCCTGTTTCATCCAATAATCTCTGAAATT
AAAAATTAAAAATTCCAAAATTTTAATCTTGGAAATTAAAAATTCCAAATTTGGAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 635