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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AV08
Library FC
(Link to library)
Clone ID FC-AV08
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15147-1
Original site URL
Representative seq. ID FC-AV08E
(Link to Original site)
Representative DNA sequence 
>FC-AV08 (FC-AV08Q) /CSM/FC/FC-AV/FC-AV08Q.Seq.d/
AAGATGAATTCCCAAGAGGTTACTTTTTAAATACACCACCATCAGTACCATACCCAATGA
ATCCATACTATTTAACAGCTCTTTGTTTACTTCCAATCATTGGTTCATTATTTTCAATAC
GTTATTTTGATAATAAATCAGAAAACGATTATGAATTATTTAGAAGCGAATACTTGGAAG
CAAATCCAGCACTCAAACAAAAATATTACGATATCACCCACAAATATCCATTATCTCATT
AAATTCGATAAATAATTTTTTAAAAAAATAATACATATAAAAAGAATAATAATACAGTTA
AAGTAATACAGAAATTGTAGAAAATATTCAAAACTCAAAAATTTAAAAAAAAAAAAAAAA
ATAAAAAAGAAAAGATAAAGGAAGAAACATAGAGTATTGTAATAAAAAAAAAAAAACAAA
T
sequence update 1997. 5.12
Translated Amino Acid sequence 
DEFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIGSLFSIRYFDNKSENDYELFRSEYLEA
NPALKQKYYDITHKYPLSH*ir*iif*knntykknnntvkviqkl*kifktqkfkkkkkn
kkekikeet*sivikkkkq
Translated Amino Acid sequence (All Frames) 
Frame A:
kmnsqevtf*ihhhqyhtq*ihti*qlfvyfqslvhyfqyviliinqktimnyleantwk
qiqhsnknitisptnihylikfdk*ffkkiihikriiiqlk*yrncrkysklknlkkkkk
ikkkr*rkkhrvl**kkknk


Frame B:
r*ipkrllfkyttistipnesilfnsslftsnhwfiifntlf***irkrl*ii*krilgs
ksstqtkilryhpqisiislnsinnflkk*yi*ke**ys*snteiveniqnski*kkkkk
*krkdkgrnieycnkkkktn


Frame C:
DEFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIGSLFSIRYFDNKSENDYELFRSEYLEA
NPALKQKYYDITHKYPLSH*ir*iif*knntykknnntvkviqkl*kifktqkfkkkkkn
kkekikeet*sivikkkkq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSF511 (SSF511Q) /CSM/SS/SSF5-A/SSF511Q.Seq.d/                        624   e-178
FC-AV08 (FC-AV08Q) /CSM/FC/FC-AV/FC-AV08Q.Seq.d/                      624   e-178
SSK578 (SSK578Q) /CSM/SS/SSK5-D/SSK578Q.Seq.d/                        615   e-175
FC-AS05 (FC-AS05Q) /CSM/FC/FC-AS/FC-AS05Q.Seq.d/                      615   e-175
FC-301 (FC-301Q) /CSM/CG/CG-FC/FC-301Q.Seq.d/                         615   e-175
SLC336 (SLC336Q) /CSM/SL/SLC3-B/SLC336Q.Seq.d/                         40   0.026
SHG322 (SHG322Q) /CSM/SH/SHG3-A/SHG322Q.Seq.d/                         40   0.026
CHR274 (CHR274Q) /CSM/CH/CHR2-D/CHR274Q.Seq.d/                         40   0.026
CHJ854 (CHJ854Q) /CSM/CH/CHJ8-C/CHJ854Q.Seq.d/                         40   0.026
CFH544 (CFH544Q) /CSM/CF/CFH5-B/CFH544Q.Seq.d/                         40   0.026
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    34   3e-04  10
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   5e-04  11
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   0.001  19
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    34   0.001  11
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    32   0.003  10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   0.004  11
AC145267|AC145267.2 Mus musculus chromosome UNK clone RP24-161F7, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   0.009  6
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    38   0.010  12
BX572092|BX572092.1 Prochlorococcus marinus MED4 complete genome; segment 3/5.    34   0.011  9
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence.    32   0.012  11
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QN4) RecName: Full=Uncharacterized transmembrane protein DDB...   172   4e-42
AY338732_1(AY338732|pid:none) Avian infectious bronchitis virus ...    34   1.4
EU637854_1(EU637854|pid:none) Infectious bronchitis virus strain...    34   1.8
CP001055_1360(CP001055|pid:none) Elusimicrobium minutum Pei191, ...    33   2.4
Z69629_1(Z69629|pid:none) Infectious bronchitis virus RNA (defec...    33   3.1
Z30541_1(Z30541|pid:none) Avian infectious bronchitis virus mRNA...    33   3.1
AY319651_1(AY319651|pid:none) Avian infectious bronchitis virus ...    33   3.1
FJ807652_2(FJ807652|pid:none) Infectious bronchitis virus strain...    33   3.1
(P0C6Y1) RecName: Full=Replicase polyprotein 1ab;          Short...    33   3.1
AY641576_1(AY641576|pid:none) Avian infectious bronchitis virus ...    33   3.1
protein update 2009. 7. 2
PSORT 

 psg: 0.75  gvh: 0.69  alm: 0.29  top: 0.47  tms: 0.07  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.87  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: cytoplasmic
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for FC-AV08 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AV08E
Full length Seq. 
>FC-AV08E.Seq
AAGATGAATTCCCAAGAGGTTACTTTTTAAATACACCACCATCAGTACCATACCCAATGA
ATCCATACTATTTAACAGCTCTTTGTTTACTTCCAATCATTGGTTCATTATTTTCAATAC
GTTATTTTGATAATAAATCAGAAAACGATTATGAATTATTTAGAAGCGAATACTTGGAAG
CAAATCCAGCACTCAAACAAAAATATTACGATATCACCCACAAATATCCATTATCTCATT
AAATTCGATAAATAATTTTTTAAAAAAATAATACATATAAAAAGAATAATAATACAGTTA
AAGTAATACAGAAATTGTAGAAAATATTCAAAACTCAAAAATTTAAAAAAAAAAAAAAAA
ATAAAAAAGAAAAGATAAAGGAAGAAACATAGAGTATTGTAATAAAAAAAAAAAAACAAA
T
Length of full length seq. 421