>FC-AV04 (FC-AV04Q) /CSM/FC/FC-AV/FC-AV04Q.Seq.d/
AATTTTTAATTTTACATCTAAAGAAAAAAAAAAATAAAACAATTCCTTTATGTTTAGTGT
GGTAACATTGTTTTTTAATTTTATTTTATTTTATTTTTTCATTTTTAATTATTTTTTTAA
TTATTTTTTTATTAGTTTTTTTTTTCCCATTCAAATAATTATTATTTTTAATTATTTTTT
ATTTTATTTATTTTTTTTATCTTAAATCCCAAAATAATTAAAAATATAAGCAGTATAAGA
TTATTTTTCGAATTTTTAATTATAATAATGTTAATGTTCTTTAAGAAATAGGAAAATTAC
GTAATAGXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAACAATTTGTTTCCAGGG
AAACCCAAATTATTAATTGGAAAAAAAAAATTATTTAATATTTATAAATTCAAATAAAAT
TAAAAATAAAAAATAAAAAACAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAATTT
GGGTTTTTAAGGACATGAAAATCCCCAAACGATTTATGGTTTCCAATAATTATGAAATTA
TACTAAAAATACTTTTTTCTTTTTTTGTTATTCTTCAATAATTATTTTATTTTAAATATT
TTTCAATTTTTTTATTTTATTAATACTTTTTTTAATTATCATTATATAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

flilhlkkkknktiplclvw*hcflilfyfifsfliifliifllvfffpfk*llfliify
fiyffylksqnn*kykqykiifrifnynnvnvl*EIGKLRN---

---KKKKKKKKNNLFPGKPKLLIGKKKLFNIYKFK*n*k*kiknkkkkkk*nkik*fgfl
rt*kspndlwfpiimkly*kyfflfllffnnyfilnifqffyfintffnyhyikkkkkkk
kkk

Frame A:
nf*fyi*rkkkikqflyv*cgnivf*fyfilffhf*lff*lffy*fffshsnnyyf*lff
ilfiffilnpkiiknissirlffefliiimlmffkk*enyvi---

---kkkkkkkkkqfvsretqiinwkkkii*yl*iqiklkiknkkqkkkkkik*nkiiwvf
kdmkipkrfmvsnnyeiilkilfsffvilq*lfyfkyfsiflfy*yff*lslykkkkkkk
kkkk

Frame B:
ifnftskekkk*nnsfmfsvvtlffnfilfyffifnyffnyffisfffpiqiiiifnyfl
fylffls*ipk*lki*av*dyfsnf*l**c*cslrnrkit**---

---KKKKKKKKNNLFPGKPKLLIGKKKLFNIYKFK*n*k*kiknkkkkkk*nkik*fgfl
rt*kspndlwfpiimkly*kyfflfllffnnyfilnifqffyfintffnyhyikkkkkkk
kkk

Frame C:
flilhlkkkknktiplclvw*hcflilfyfifsfliifliifllvfffpfk*llfliify
fiyffylksqnn*kykqykiifrifnynnvnvl*EIGKLRN---

---kkkkkkkkticfqgnpny*lekknylifinsnkiknkk*ktkkkkknkik*nnlgf*
ghenpqtiygfq*l*nytkntffffcyssiiilf*iffnffillilfliiii*kkkkkkk
kkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AV04 (FC-AV04Q) /CSM/FC/FC-AV/FC-AV04Q.Seq.d/                      216   3e-55
FC-BA01 (FC-BA01Q) /CSM/FC/FC-BA/FC-BA01Q.Seq.d/                      184   1e-45
FC-327 (FC-327Q) /CSM/CG/CG-FC/FC-327Q.Seq.d/                         184   1e-45
SSJ301 (SSJ301Q) /CSM/SS/SSJ3-A/SSJ301Q.Seq.d/                         42   0.011
SSI450 (SSI450Q) /CSM/SS/SSI4-C/SSI450Q.Seq.d/                         42   0.011
SSH570 (SSH570Q) /CSM/SS/SSH5-C/SSH570Q.Seq.d/                         42   0.011
SSG255 (SSG255Q) /CSM/SS/SSG2-C/SSG255Q.Seq.d/                         42   0.011
SSF810 (SSF810Q) /CSM/SS/SSF8-A/SSF810Q.Seq.d/                         42   0.011
SLH741 (SLH741Q) /CSM/SL/SLH7-B/SLH741Q.Seq.d/                         42   0.011
SHI170 (SHI170Q) /CSM/SH/SHI1-C/SHI170Q.Seq.d/                         42   0.011

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    38  0.010  5
AC018835|AC018835.3 Homo sapiens chromosome 3p clone RP11-566O14, WORKING DRAFT SEQUENCE, 7 unordered pieces.    38  0.011  4
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    36  0.014  7
AX344558|AX344558.1 Sequence 9 from Patent WO0200932.             42  0.022  7
BX322795|BX322795.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-106E12.    34  0.025  7
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    36  0.026  8
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    40  0.028  5
AC137551|AC137551.1 Homo sapiens chromosome 5 clone RP11-867C24, complete sequence.    42  0.032  2
AC004992|AC004992.2 Homo sapiens PAC clone RP5-1189K17 from 7q11.2-q22, complete sequence.    50  0.035  1
AL355609|AL355609.9 Human DNA sequence from clone RP11-282D7 on chromosome 13.    44  0.042  3

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 362,219,792

 psg: 0.36  gvh: 0.18  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.57  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: plasma membrane

>> prediction for FC-AV04 is nuc

>FC-AV04F.Seq
AATTTTTAATTTTACATCTAAAGAAAAAAAAAAATAAAACAATTCCTTTATGTTTAGTGT
GGTAACATTGTTTTTTAATTTTATTTTATTTTATTTTTTCATTTTTAATTATTTTTTTAA
TTATTTTTTTATTAGTTTTTTTTTTCCCATTCAAATAATTATTATTTTTAATTATTTTTT
ATTTTATTTATTTTTTTTATCTTAAATCCCAAAATAATTAAAAATATAAGCAGTATAAGA
TTATTTTTCGAATTTTTAATTATAATAATGTTAATGTTCTTTAAGAAATAGGAAAATTAC
GTAATAG----------

>FC-AV04Z.Seq
----------AAAAAAAAAAAAAAAAAAAAAAAAAAACAATTTGTTTCCAGGGAAACCCA
AATTATTAATTGGAAAAAAAAAATTATTTAATATTTATAAATTCAAATAAAATTAAAAAT
AAAAAATAAAAAACAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAATTTGGGTTTT
TAAGGACATGAAAATCCCCAAACGATTTATGGTTTCCAATAATTATGAAATTATACTAAA
AATACTTTTTTCTTTTTTTGTTATTCTTCAATAATTATTTTATTTTAAATATTTTTCAAT
TTTTTTATTTTATTAATACTTTTTTTAATTATCATTATATAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

>FC-AV04P.Seq
AATTTTTAATTTTACATCTAAAGAAAAAAAAAAATAAAACAATTCCTTTATGTTTAGTGT
GGTAACATTGTTTTTTAATTTTATTTTATTTTATTTTTTCATTTTTAATTATTTTTTTAA
TTATTTTTTTATTAGTTTTTTTTTTCCCATTCAAATAATTATTATTTTTAATTATTTTTT
ATTTTATTTATTTTTTTTATCTTAAATCCCAAAATAATTAAAAATATAAGCAGTATAAGA
TTATTTTTCGAATTTTTAATTATAATAATGTTAATGTTCTTTAAGAAATAGGAAAATTAC
GTAATAG----------AAAAAAAAAAAAAAAAAAAAAAAAAAACAATTTGTTTCCAGGG
AAACCCAAATTATTAATTGGAAAAAAAAAATTATTTAATATTTATAAATTCAAATAAAAT
TAAAAATAAAAAATAAAAAACAAAAAAAAAAAAAAAAAATAAAATAAAATAAAATAATTT
GGGTTTTTAAGGACATGAAAATCCCCAAACGATTTATGGTTTCCAATAATTATGAAATTA
TACTAAAAATACTTTTTTCTTTTTTTGTTATTCTTCAATAATTATTTTATTTTAAATATT
TTTCAATTTTTTTATTTTATTAATACTTTTTTTAATTATCATTATATAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA