>FC-AV02 (FC-AV02Q) /CSM/FC/FC-AV/FC-AV02Q.Seq.d/
XXXXXXXXXXTCTTTCCTCCAAGATTTAAAGATGCCACTAAAATCAACAGAGGTCAAATC
GATATCGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAGTTGGTGCCTCAGAAGCT
ACCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTTTAGAACCAAAAATCATC
TATGATGCTGGTGCCTGTTATTCACCATCTATCTCTGAAGAAGATCTCATCAACAAATTC
AAACAAGGTATCTTCAACATTGCTGCCATCTCCTTGGAAATTGGTTACCCAACCGTTGCT
TCAATTCCACATTCAGTCATGAATGCTTTCAAGAATTTATTAGCCATCTCATTCGAAACC
TCTTACACTTTCGATGCTGCTGAAAAATTCAAATCAGCCGCTGCTGCTGCCCCAGTTGCT
GCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCCAAGAAAGTCGTCGTCGAAGAAAAG
AAAGAAGAATCAGATGATGATATGGGTATGGGTCTCTTTGATTAAGATTTGAATAAATAA
ATTTTTTTTTTCAAAAAACATCAAAAAAAAAAAAAA

---FPPRFKDATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIY
DAGACYSPSISEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETS
YTFDAAEKFKSAAAAAPVAAAPSAAAPAAAAKKVVVEEKKEESDDDMGMGLFD*dlnk*i
fffkkhqkkkk

Frame A:
---lsski*rch*nqqrsnryrq*sphh*nrskswclrsypltkiehqtihlwfrtknhl
*cwcllftiyl*rrshqqiqtrylqhcchllgnwlpnrcfnstfshecfqefishlirnl
lhfrcc*kiqisrcccpsccrsirccsscrcqesrrrrkerrir**ygygsl*lrfe*in
fffqktskkkk


Frame B:
---FPPRFKDATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIY
DAGACYSPSISEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETS
YTFDAAEKFKSAAAAAPVAAAPSAAAPAAAAKKVVVEEKKEESDDDMGMGLFD*dlnk*i
fffkkhqkkkk


Frame C:
---flqdlkmplkstevksissmkstslkpvkklvpqklpsykn*tsnhspmv*nqkssm
mlvpvihhlslkkisstnsnkvsstllpspwklvtqpllqfhiqs*mlsriy*pshskpl
tlsmllknsnqplllpqllplhplllqlplprkssskkrkknqmmiwvwvsliki*inkf
ffsknikkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AV02 (FC-AV02Q) /CSM/FC/FC-AV/FC-AV02Q.Seq.d/                     1094   0.0
SLH204 (SLH204Q) /CSM/SL/SLH2-A/SLH204Q.Seq.d/                       1080   0.0
FCL-AC21 (FCL-AC21Q) /CSM/FCL/FCL-AC/FCL-AC21Q.Seq.d/                1080   0.0
FC-BC24 (FC-BC24Q) /CSM/FC/FC-BC/FC-BC24Q.Seq.d/                     1080   0.0
FC-AZ13 (FC-AZ13Q) /CSM/FC/FC-AZ/FC-AZ13Q.Seq.d/                     1080   0.0
FC-AM22 (FC-AM22Q) /CSM/FC/FC-AM/FC-AM22Q.Seq.d/                     1080   0.0
SLG773 (SLG773Q) /CSM/SL/SLG7-D/SLG773Q.Seq.d/                       1068   0.0
SLC683 (SLC683Q) /CSM/SL/SLC6-D/SLC683Q.Seq.d/                       1065   0.0
FC-BM12 (FC-BM12Q) /CSM/FC/FC-BM/FC-BM12Q.Seq.d/                     1051   0.0
FC-BT06 (FC-BT06Q) /CSM/FC/FC-BT/FC-BT06Q.Seq.d/                     1049   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X56194|X56194.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P0.   718  0.0  3
CD203589|CD203589.1 Ls_AM1_10H07_T7 Litomosoides sigmodontis adult male 1 Litomosoides sigmodontis cDNA clone Ls_AM1_10H07 5', mRNA sequence.    60  9e-07  2
CB085937|CB085937.1 hg18g03.g1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hg18g03, mRNA sequence.    60  3e-05  1
BF779577|BF779577.1 3230-26 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3230-26, mRNA sequence.    48  8e-05  2
AA901452|AA901452.1 SWOv3MCAM03C04 Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone onch28 5' similar to TR:P91913 P91913 RIBOSOMAL PROTEIN P1 HOMOLOG. ;contains element MER22 repetitive element ;, mRNA sequence.    52  3e-04  2
BG310507|BG310507.1 SWOv3MCAM56B08SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWOv3MCAM56B08 5', mRNA sequence.    52  3e-04  2
AW355195|AW355195.1 PFOvAFCB597K Onchocerca volvulus adult female cDNA following ivermectin (SAW98PF-OvAF) Onchocerca volvulus cDNA clone PFOvAFCB597 5', mRNA sequence.    52  3e-04  2
BE760989|BE760989.1 SWOvL2CAS15E12SK Onchocerca volvulus L2 larvae cDNA (SAW98MLW-OvL2) Onchocerca volvulus cDNA clone SWOvL2CAS15E12 5', mRNA sequence.    52  4e-04  2
AI130065|AI130065.1 SWOvL3CAN53C10SK Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone SWOvL3CAN53C10 5', mRNA sequence.    52  4e-04  2
AA618720|AA618720.1 SWOv3MCA1033SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWmL3CO1033 5', mRNA sequence.    52  4e-04  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

R5DOP0(S14012) ribosomal protein P0 - slime mold (Dictyostelium ...   227   2e-58
(P22685) RecName: Full=60S acidic ribosomal protein P0;               227   2e-58
AY857422_1(AY857422|pid:none) Suberites domuncula L10e/P0 mRNA, ...   146   3e-34
EU069460_1(EU069460|pid:none) Stylophora pistillata 60S acidic r...   137   2e-31
AY072284_1(AY072284|pid:none) Spodoptera frugiperda 60S acidic r...   137   3e-31
AJ457827_1(AJ457827|pid:none) Bombyx mori mRNA for ribosomal P0 ...   136   4e-31
DQ516397_1(DQ516397|pid:none) Strongyloides ratti acidic ribosom...   135   8e-31
BC042268_1(BC042268|pid:none) Xenopus laevis acidic ribosomal pr...   134   2e-30
(Q95140) RecName: Full=60S acidic ribosomal protein P0; AltName:...   133   3e-30
AK222571_1(AK222571|pid:none) Homo sapiens mRNA for ribosomal pr...   133   3e-30

 psg: 0.55  gvh: 0.39  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for FC-AV02 is cyt

>FC-AV02Z.Seq
----------TCTTTCCTCCAAGATTTAAAGATGCCACTAAAATCAACAGAGGTCAAATC
GATATCGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAGTTGGTGCCTCAGAAGCT
ACCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTTTAGAACCAAAAATCATC
TATGATGCTGGTGCCTGTTATTCACCATCTATCTCTGAAGAAGATCTCATCAACAAATTC
AAACAAGGTATCTTCAACATTGCTGCCATCTCCTTGGAAATTGGTTACCCAACCGTTGCT
TCAATTCCACATTCAGTCATGAATGCTTTCAAGAATTTATTAGCCATCTCATTCGAAACC
TCTTACACTTTCGATGCTGCTGAAAAATTCAAATCAGCCGCTGCTGCTGCCCCAGTTGCT
GCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCCAAGAAAGTCGTCGTCGAAGAAAAG
AAAGAAGAATCAGATGATGATATGGGTATGGGTCTCTTTGATTAAGATTTGAATAAATAA
ATTTTTTTTTTCAAAAAACATCAAAAAAAAAAAAAA