>FC-AV01 (FC-AV01Q) /CSM/FC/FC-AV/FC-AV01Q.Seq.d/
XXXXXXXXXXATCTGGTTCCCATGGTGGTTCCCAATCACAATCTGCTGGTTCAGATTCAC
AATCTGCTGGTTCAGAATCATCCCAATCTGAATCCGGTTCACAATCACAATCTGAATCCG
GTTCACAATCACAATCACAATCTGGTTCTCAATCATTCTCTGGTTCCTTATACTCTGGTT
CATACTCTGGTTCCCAATCTGGTTCCCAATCTGGTAACAGCGGTGCTGCTGTTAAACAAA
CTGGTGCTGGTTCAGGTTCAGGTTCAGGTTCAGGTTCCGGTTCCGGTTCAGGTTCAGGTT
CAGTCTCAGGTTCAGCTTCAGGTTCCGCCTCAGGTTCCGCCTCAGGTTCATCAAGTGGTA
GCAATAGCAACGGTGGTGTTTATCCAACCGCTGGTGACTACTGGATCGTTAAAAACTCAT
GGGGTACCTCATGGGGTATGGATGGTTACATTTTAATGACCAAAGGAAATAACAATCAAT
GCGGTATTGCAACAATGGCCTCACGTCCAACTGCTGTTGCATCACTTTAAATTAACGATA
CATATATATACATATTTATATAATTTTATAATTAATAAAAAATAATACGAAAACATATAA
AATTTATATGATAAATAAATAAAAAATATTTGTAATATATAAAAATTAACAAA

---SGSHGGSQSQSAGSDSQSAGSESSQSESGSQSQSESGSQSQSQSGSQSFSGSLYSGS
YSGSQSGSQSGNSGAAVKQTGAGSGSGSGSGSGSGSGSGSVSGSASGSASGSASGSSSGS
NSNGGVYPTAGDYWIVKNSWGTSWGMDGYILMTKGNNNQCGIATMASRPTAVASL*indt
yiyifi*fyn**kiirkhikfi**inkkyl*yikink

Frame A:
---SGSHGGSQSQSAGSDSQSAGSESSQSESGSQSQSESGSQSQSQSGSQSFSGSLYSGS
YSGSQSGSQSGNSGAAVKQTGAGSGSGSGSGSGSGSGSGSVSGSASGSASGSASGSSSGS
NSNGGVYPTAGDYWIVKNSWGTSWGMDGYILMTKGNNNQCGIATMASRPTAVASL*indt
yiyifi*fyn**kiirkhikfi**inkkyl*yikink


Frame B:
---lvpmvvpnhnllvqihnllvqnhpnlnpvhnhnlnpvhnhnhnlvlnhslvpytlvh
tlvpnlvpnlvtavlllnklvlvqvqvqvqvpvpvqvqvqsqvqlqvppqvppqvhqvva
iatvvfiqplvttgslkthgvphgvwmvtf**pkeitinavlqqwphvqlllhhfkltih
iytylynfiinkk*yeni*nlydk*iknicni*klt


Frame C:
---wfpwwfpiticwfrfticwfriipi*irftiti*irftititiwfsiilwflilwfi
lwfpiwfpiw*qrccc*tnwcwfrfrfrfrfrfrfrfrfslrfsfrfrlrfrlrfikw*q
*qrwclsnrw*lldr*klmgylmgygwlhfndqrk*qsmrycnngltsncccitln*ryi
yihiyiil*liknntktykiymink*kifviykn*q

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ755 (VHJ755Q) /CSM/VH/VHJ7-C/VHJ755Q.Seq.d/                        472   e-132
VHI101 (VHI101Q) /CSM/VH/VHI1-A/VHI101Q.Seq.d/                        472   e-132
VHB771 (VHB771Q) /CSM/VH/VHB7-C/VHB771Q.Seq.d/                        472   e-132
VHB683 (VHB683Q) /CSM/VH/VHB6-D/VHB683Q.Seq.d/                        472   e-132
VFO832 (VFO832Q) /CSM/VF/VFO8-B/VFO832Q.Seq.d/                        472   e-132
VFO544 (VFO544Q) /CSM/VF/VFO5-B/VFO544Q.Seq.d/                        472   e-132
VFN695 (VFN695Q) /CSM/VF/VFN6-D/VFN695Q.Seq.d/                        472   e-132
VFN591 (VFN591Q) /CSM/VF/VFN5-D/VFN591Q.Seq.d/                        472   e-132
VFN339 (VFN339Q) /CSM/VF/VFN3-B/VFN339Q.Seq.d/                        472   e-132
VFN322 (VFN322Q) /CSM/VF/VFN3-A/VFN322Q.Seq.d/                        472   e-132

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.   472  0.0  5
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.   117  5e-28  3
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    74  4e-24  5
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    92  4e-17  2
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    92  4e-15  3
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.    82  9e-12  1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.    72  9e-09  1
AZ537833|AZ537833.1 ENTGB94TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  0.008  1
BH163027|BH163027.1 ENTTL13TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  0.008  1
BH160780|BH160780.1 ENTQV95TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  0.008  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94504) RecName: Full=Cysteine proteinase 7;          EC=3.4.22...   109   6e-23
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...    80   4e-14
(Q94503) RecName: Full=Cysteine proteinase 6;          EC=3.4.22...    79   8e-14
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...    72   1e-11
EU143709_1(EU143709|pid:none) Stichopus japonicus cathepsin L mR...    71   3e-11
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys...    70   4e-11
(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...    70   5e-11
AF098670_1(AF098670|pid:none) Tethya aurantia silicatein beta mR...    70   5e-11
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...    69   9e-11
AY277910_1(AY277910|pid:none) Branchiostoma belcheri tsingtaunes...    69   1e-10

 psg: 0.73  gvh: 0.43  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AV01 is cyt

>FC-AV01Z.Seq
----------ATCTGGTTCCCATGGTGGTTCCCAATCACAATCTGCTGGTTCAGATTCAC
AATCTGCTGGTTCAGAATCATCCCAATCTGAATCCGGTTCACAATCACAATCTGAATCCG
GTTCACAATCACAATCACAATCTGGTTCTCAATCATTCTCTGGTTCCTTATACTCTGGTT
CATACTCTGGTTCCCAATCTGGTTCCCAATCTGGTAACAGCGGTGCTGCTGTTAAACAAA
CTGGTGCTGGTTCAGGTTCAGGTTCAGGTTCAGGTTCCGGTTCCGGTTCAGGTTCAGGTT
CAGTCTCAGGTTCAGCTTCAGGTTCCGCCTCAGGTTCCGCCTCAGGTTCATCAAGTGGTA
GCAATAGCAACGGTGGTGTTTATCCAACCGCTGGTGACTACTGGATCGTTAAAAACTCAT
GGGGTACCTCATGGGGTATGGATGGTTACATTTTAATGACCAAAGGAAATAACAATCAAT
GCGGTATTGCAACAATGGCCTCACGTCCAACTGCTGTTGCATCACTTTAAATTAACGATA
CATATATATACATATTTATATAATTTTATAATTAATAAAAAATAATACGAAAACATATAA
AATTTATATGATAAATAAATAAAAAATATTTGTAATATATAAAAATTAACAAA