>FC-AS24 (FC-AS24Q) /CSM/FC/FC-AS/FC-AS24Q.Seq.d/
XXXXXXXXXXAAGTGTACCAGAATCAGATTGTTATATCATGAAATTTATCCTTCATGATT
GGCCAACTCAAGATTGTGTTAAAATTTTAAAAACAATTTCAAAATCAATGAAACCAAATG
CAAAAATTCATTTATTTGAAATTATCATTGATCCAAGAAAAGGTTATTCAAAATATGAAA
CTTATATTGATATTTTAATGTTTCAAATGGTAAATGCAAAAGAAAGAACTCTCGATGAAT
GGAAAGAATTATTTGAATTGGCTGATTTTAAATTAGAAAGAGTGGTTGATGATATTAAAA
CTGGTTGTATGGTAGTTTCAAAAAAATAAAAAAGAATAAAAAATGGTATATAGGAAATAA
ATAAAAAAAAAGAAATATTTTTAATCCTTTTTATTTTATATCAGAACAATAAAAACTGGT
GGATTGATTAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAA

---SVPESDCYIMKFILHDWPTQDCVKILKTISKSMKPNAKIHLFEIIIDPRKGYSKYET
YIDILMFQMVNAKERTLDEWKELFELADFKLERVVDDIKTGCMVVSKK*krikngi*ein
kkkeiflilfilyqnnknwwid*kn*kkkkkkkk

Frame A:
---SVPESDCYIMKFILHDWPTQDCVKILKTISKSMKPNAKIHLFEIIIDPRKGYSKYET
YIDILMFQMVNAKERTLDEWKELFELADFKLERVVDDIKTGCMVVSKK*krikngi*ein
kkkeiflilfilyqnnknwwid*kn*kkkkkkkk


Frame B:
---vyqnqivis*nlsfmigqlkivlkf*kqfqnq*nqmqkfiylklsliqekviqnmkl
ilif*cfkw*mqkkelsmngknylnwliln*kewlmilklvvw*fqknkke*kmvyrk*i
kkkkyf*sflfyirtiktgglikkikkkkkkkk


Frame C:
---ctrirllyheiyps*lansrlc*nfknnfkinetkcknsfi*nyh*skkrlfki*nl
y*yfnvsngkckrknsr*merii*ig*f*irksg**y*nwlygsfkkikknkkwyignk*
kkrnifnpfyfiseq*klvd*lkklkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS24 (FC-AS24Q) /CSM/FC/FC-AS/FC-AS24Q.Seq.d/                      381   e-105
FC-AR05 (FC-AR05Q) /CSM/FC/FC-AR/FC-AR05Q.Seq.d/                      381   e-105
FC-AK18 (FC-AK18Q) /CSM/FC/FC-AK/FC-AK18Q.Seq.d/                      381   e-105
FC-199 (FC-199Q) /CSM/CG/CG-FC/FC-199Q.Seq.d/                         381   e-105
FC-AR06 (FC-AR06Q) /CSM/FC/FC-AR/FC-AR06Q.Seq.d/                      323   1e-87
VSD319 (VSD319Q) /CSM/VS/VSD3-A/VSD319Q.Seq.d/                         40   0.029
SSK861 (SSK861Q) /CSM/SS/SSK8-C/SSK861Q.Seq.d/                         40   0.029
CHD653 (CHD653Q) /CSM/CH/CHD6-C/CHD653Q.Seq.d/                         40   0.029
AFC850 (AFC850Q) /CSM/AF/AFC8-C/AFC850Q.Seq.d/                         40   0.029
SHH245 (SHH245Q) /CSM/SH/SHH2-B/SHH245Q.Seq.d/                         36   0.45

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX458510|AX458510.1 Sequence 56 from Patent WO0246454.            38  0.011  5
AQ108933|AQ108933.1 CIT-HSP-2372K5.TR CIT-HSP Homo sapiens genomic clone 2372K5, DNA sequence.    42  0.23  2
BH121758|BH121758.1 RPCI-24-300G16.TV RPCI-24 Mus musculus genomic clone RPCI-24-300G16 , DNA sequence.    40  0.27  2
AC122289|AC122289.2 Mus musculus chromosome 3 clone RP23-254F12, complete sequence.    50  0.35  5
AC006740|AC006740.2 Caenorhabditis elegans clone Y38B5, WORKING DRAFT SEQUENCE, 12 unordered pieces.    46  0.36  1
AF016679|AF016679.1 Caenorhabditis elegans cosmid T28C12.    46  0.36  1
CB286369|CB286369.1 CMD35_H09_79 UMNMPM3 Sus scrofa cDNA clone PPSUBLIB_20H09 5', mRNA sequence.    46  0.36  1
AX346752|AX346752.1 Sequence 1823 from Patent WO0200928.          32  1.2  4
AX251357|AX251357.1 Sequence 325 from Patent WO0168912.           32  1.2  4
AC134094|AC134094.1 Rattus norvegicus clone CH230-34B17, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    44  1.4  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T638) RecName: Full=Des-methyl DIF-1 methyltransferase A;    ...    77   2e-13
DQ419912_1(DQ419912|pid:none) Medicago truncatula IOMT 4 mRNA, c...    71   1e-11
AY268894_1(AY268894|pid:none) Papaver somniferum (R,S)-norcoclau...    70   2e-11
AP007175_42(AP007175|pid:none) Aspergillus oryzae RIB40 genomic ...    67   1e-10
EF535147_1(EF535147|pid:none) Vitis vinifera O-methyltransferase...    66   3e-10
AY337459_1(AY337459|pid:none) Mentha x piperita flavonoid 8-O-me...    65   5e-10
AY838877_7(AY838877|pid:none) Aspergillus fumigatus putative gli...    64   1e-09
AC146549_20(AC146549|pid:none) Medicago truncatula clone mth2-7p...    64   2e-09
AC146549_15(AC146549|pid:none) Medicago truncatula clone mth2-7p...    64   2e-09
AM182778_1(AM182778|pid:none) Rosa canina partial oomtB gene for...    64   2e-09

 psg: 0.75  gvh: 0.31  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for FC-AS24 is nuc

>FC-AS24Z.Seq
----------AAGTGTACCAGAATCAGATTGTTATATCATGAAATTTATCCTTCATGATT
GGCCAACTCAAGATTGTGTTAAAATTTTAAAAACAATTTCAAAATCAATGAAACCAAATG
CAAAAATTCATTTATTTGAAATTATCATTGATCCAAGAAAAGGTTATTCAAAATATGAAA
CTTATATTGATATTTTAATGTTTCAAATGGTAAATGCAAAAGAAAGAACTCTCGATGAAT
GGAAAGAATTATTTGAATTGGCTGATTTTAAATTAGAAAGAGTGGTTGATGATATTAAAA
CTGGTTGTATGGTAGTTTCAAAAAAATAAAAAAGAATAAAAAATGGTATATAGGAAATAA
ATAAAAAAAAAGAAATATTTTTAATCCTTTTTATTTTATATCAGAACAATAAAAACTGGT
GGATTGATTAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAA