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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AS21
Library FC
(Link to library)
Clone ID FC-AS21
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15326-1
Original site URL
Representative seq. ID FC-AS21P
(Link to Original site)
Representative DNA sequence 
>FC-AS21 (FC-AS21Q) /CSM/FC/FC-AS/FC-AS21Q.Seq.d/
CACCAAAATATAAAATATATACTTAAAAAGATGATTTCAAACCTTTCAAAAGTTTTAAAC
TCAAATGTAAAGAGAATGTATACTACAGCAAAAAACCTTGAATCAGTTGTAATTGTTTCA
GCAGTTAGAACACCAATTGGTTCAATTGGTGGTTCATTATCAACAATACCAGGTACAAAA
TTATCATCAATAACAATTGAAGAAGCAGTAAAGAGAGCAGGTATTAAACCATCAGATGTT
GATGAAGCAATCATTGGTAATGTAATTTCAGCCAATTTAGGACAAGCACCAGCACGTCAA
TGTGCATTGGGAGCTGGTTTAGAACAAAAAACCATCACAACCACCATCAATAAAGTATGT
TCATCAGGTGTGAAAGCAATTGTATTTGGCGCACAATCAATCGCATTGGGTCACAGCAAA
ACTGTGGTTGCAGGTGGTTTCGAATCAATGTCACAAGTGCCATACTATGCCGATAAAATG
AGATTCGGTGCAAAGTATGGCATCCAXXXXXXXXXXTAATAATAATAATAATAATAATAA
TAAAAAGAAAAAAAAAATCAAGAAAAGTAGGAAATTAAATATATTATTATTTTTATAAAA
AAAAAAAATAAAATAATATGAACAAAGATCACCATAAAATTAATTTTTTTTAAATAAAAA
ATTTAATAATCAAATAATGTTAATAATTAAAAAAAAAAAA
sequence update 1997. 4.26
Translated Amino Acid sequence 
HQNIKYILKKMISNLSKVLNSNVKRMYTTAKNLESVVIVSAVRTPIGSIGGSLSTIPGTK
LSSITIEEAVKRAGIKPSDVDEAIIGNVISANLGQAPARQCALGAGLEQKTITTTINKVC
SSGVKAIVFGAQSIALGHSKTVVAGGFESMSQVPYYADKMRFGAKYGI---

---NNNNNNNNKKKKKIKKSRKLNILLFL*kkkik*yeqrsp*n*fflnkkfnnqimlii
kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
HQNIKYILKKMISNLSKVLNSNVKRMYTTAKNLESVVIVSAVRTPIGSIGGSLSTIPGTK
LSSITIEEAVKRAGIKPSDVDEAIIGNVISANLGQAPARQCALGAGLEQKTITTTINKVC
SSGVKAIVFGAQSIALGHSKTVVAGGFESMSQVPYYADKMRFGAKYGI---

---*********kekknqek*eikyiiifikkknkii*tkitikliffk*ki**snnvnn
*kkk

Frame B:
tki*niylkr*fqtfqkf*tqm*recilqqktlnql*lfqqlehqlvqlvvhyqqyqvqn
yhq*qlkkq*reqvlnhqmlmkqslvm*fqpi*dkhqhvnvhwelv*nkkpsqppsikyv
hqv*kqlylahnqshwvtaklwlqvvsnqchkchtmpik*dsvqsmas---

---NNNNNNNNKKKKKIKKSRKLNILLFL*kkkik*yeqrsp*n*fflnkkfnnqimlii
kkkk

Frame C:
pkykiyt*kddfkpfksfklkckenvyyskkp*iscncfss*ntnwfnwwfiinntryki
iinnn*rsskesry*tirc**snhw*cnfsqfrtststsmcigswfrtknhhnhhq*smf
ircesnciwrtinrigsqqncgcrwfrinvtsailcr*neirckvwhp---

---iiiiiiiikrkkksrkvgn*iyyyfykkkk*nnmnkdhhkinff*iknliik*c**l
kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS21 (FC-AS21Q) /CSM/FC/FC-AS/FC-AS21Q.Seq.d/                     1003   0.0
VFO653 (VFO653Q) /CSM/VF/VFO6-C/VFO653Q.Seq.d/                        987   0.0
VFN815 (VFN815Q) /CSM/VF/VFN8-A/VFN815Q.Seq.d/                        987   0.0
VFN689 (VFN689Q) /CSM/VF/VFN6-D/VFN689Q.Seq.d/                        987   0.0
VFM844 (VFM844Q) /CSM/VF/VFM8-B/VFM844Q.Seq.d/                        987   0.0
VFH459 (VFH459Q) /CSM/VF/VFH4-C/VFH459Q.Seq.d/                        987   0.0
VFE130 (VFE130Q) /CSM/VF/VFE1-B/VFE130Q.Seq.d/                        987   0.0
VFC301 (VFC301Q) /CSM/VF/VFC3-A/VFC301Q.Seq.d/                        987   0.0
VFA412 (VFA412Q) /CSM/VF/VFA4-A/VFA412Q.Seq.d/                        987   0.0
SFF687 (SFF687Q) /CSM/SF/SFF6-D/SFF687Q.Seq.d/                        987   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   856  0.0  5
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    36  0.008  8
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5.    42  0.013  8
AC118328|AC118328.5 Rattus norvegicus clone CH230-325D7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    52  0.014  2
AC111001|AC111001.4 Homo sapiens chromosome 4 clone RP13-933J18, complete sequence.    50  0.016  3
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.        38  0.017  6
AF362375|AF362375.2 Dictyostelium discoideum histidine kinase DhkE (dhkE) gene, complete cds.    34  0.020  4
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          38  0.027  6
AF030692|AF030692.1 Plasmodium falciparum strain 7G8 CG2 (cg2) gene, complete cds.    44  0.028  2
AF030693|AF030693.1 Plasmodium falciparum strain HB3 CG2 (cg2) gene, complete cds.    44  0.028  2
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86AD9) RecName: Full=Probable acetyl-CoA acetyltransferase;   ...   300   3e-80
D89184_1(D89184|pid:none) Schizosaccharomyces pombe mRNA, partia...   179   9e-44
AP007174_12(AP007174|pid:none) Aspergillus oryzae RIB40 genomic ...   158   1e-37
BT071305_1(BT071305|pid:none) Picea sitchensis clone WS02822_K16...   154   3e-36
(Q6AZA0) RecName: Full=Acetyl-CoA acetyltransferase, mitochondri...   152   1e-35
BT042208_1(BT042208|pid:none) Zea mays full-length cDNA clone ZM...   151   2e-35
FB905633_1(FB905633|pid:none) Sequence 124906 from Patent WO2008...   151   2e-35
CU633901_21(CU633901|pid:none) Podospora anserina genomic DNA ch...   150   3e-35
(Q6NU46) RecName: Full=Acetyl-CoA acetyltransferase A, mitochond...   150   3e-35
(Q8S4Y1) RecName: Full=Acetyl-CoA acetyltransferase, cytosolic 1...   149   6e-35
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.48  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.08
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 40.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for FC-AS21 is mit
5' end seq. ID FC-AS21F
5' end seq. 
>FC-AS21F.Seq
CACCAAAATATAAAATATATACTTAAAAAGATGATTTCAAACCTTTCAAAAGTTTTAAAC
TCAAATGTAAAGAGAATGTATACTACAGCAAAAAACCTTGAATCAGTTGTAATTGTTTCA
GCAGTTAGAACACCAATTGGTTCAATTGGTGGTTCATTATCAACAATACCAGGTACAAAA
TTATCATCAATAACAATTGAAGAAGCAGTAAAGAGAGCAGGTATTAAACCATCAGATGTT
GATGAAGCAATCATTGGTAATGTAATTTCAGCCAATTTAGGACAAGCACCAGCACGTCAA
TGTGCATTGGGAGCTGGTTTAGAACAAAAAACCATCACAACCACCATCAATAAAGTATGT
TCATCAGGTGTGAAAGCAATTGTATTTGGCGCACAATCAATCGCATTGGGTCACAGCAAA
ACTGTGGTTGCAGGTGGTTTCGAATCAATGTCACAAGTGCCATACTATGCCGATAAAATG
AGATTCGGTGCAAAGTATGGCATCCA----------
Length of 5' end seq. 506
3' end seq. ID FC-AS21Z
3' end seq. 
>FC-AS21Z.Seq
----------TAATAATAATAATAATAATAATAATAAAAAGAAAAAAAAAATCAAGAAAA
GTAGGAAATTAAATATATTATTATTTTTATAAAAAAAAAAAATAAAATAATATGAACAAA
GATCACCATAAAATTAATTTTTTTTAAATAAAAAATTTAATAATCAAATAATGTTAATAA
TTAAAAAAAAAAAA
Length of 3' end seq. 184
Connected seq. ID FC-AS21P
Connected seq. 
>FC-AS21P.Seq
CACCAAAATATAAAATATATACTTAAAAAGATGATTTCAAACCTTTCAAAAGTTTTAAAC
TCAAATGTAAAGAGAATGTATACTACAGCAAAAAACCTTGAATCAGTTGTAATTGTTTCA
GCAGTTAGAACACCAATTGGTTCAATTGGTGGTTCATTATCAACAATACCAGGTACAAAA
TTATCATCAATAACAATTGAAGAAGCAGTAAAGAGAGCAGGTATTAAACCATCAGATGTT
GATGAAGCAATCATTGGTAATGTAATTTCAGCCAATTTAGGACAAGCACCAGCACGTCAA
TGTGCATTGGGAGCTGGTTTAGAACAAAAAACCATCACAACCACCATCAATAAAGTATGT
TCATCAGGTGTGAAAGCAATTGTATTTGGCGCACAATCAATCGCATTGGGTCACAGCAAA
ACTGTGGTTGCAGGTGGTTTCGAATCAATGTCACAAGTGCCATACTATGCCGATAAAATG
AGATTCGGTGCAAAGTATGGCATCCA----------TAATAATAATAATAATAATAATAA
TAAAAAGAAAAAAAAAATCAAGAAAAGTAGGAAATTAAATATATTATTATTTTTATAAAA
AAAAAAAATAAAATAATATGAACAAAGATCACCATAAAATTAATTTTTTTTAAATAAAAA
ATTTAATAATCAAATAATGTTAATAATTAAAAAAAAAAAA
Length of connected seq. 690
Full length Seq ID -
Full length Seq. -
Length of full length seq. -