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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AS20
Library FC
(Link to library)
Clone ID FC-AS20
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15987-1
Original site URL
Representative seq. ID FC-AS20P
(Link to Original site)
Representative DNA sequence 
>FC-AS20 (FC-AS20Q) /CSM/FC/FC-AS/FC-AS20Q.Seq.d/
ATTGAAAATGACGAAGACGACGACGACGATGATGCTTGGTCAGACGAACCAGTAAAGAAA
GGAGGAAGTGGTGGCGGCGGTAGTGGAAGTTCATACTCTTTTGGAGGTGTACCCAATGCT
ATTACTTCTCTTGTTACAGCTTCTTCTACTCCTGCTTCCTATTTAGCAGCCAAATCTCAA
CCAAAAGACGAAGAAGAAGAGTGGGGTGATGAAGATATGGGTTTTGATCTTTTTGGTGAC
TATCCAACATCATCAACAACAACAACAAAAGCAGCAGCAACAACAACAGTTTCAAAGCCA
ACATCGTTACCTAAAAAAAAGGAATCATATGATGAAGATGAAGACATGGGATTTGGTCTT
TTTGGTGATGAAGAAGATTATCAATTACAAAGGGTATTGTCTCAATCCTTATATGAATCA
AAACAAATACAACCACAACAACCAAAATCAGGACCACAAAAAGAACAAGAAGAGTCTGAT
GGAGAAGGGGATTGTGGTTTTGGATTATTTGGCGAATACGATGATTATTGTCCACCACCA
CCAAAGTCACAACCACAACCACAGCTACAATCTCAAAAGCAACAAGAAAGATAAGATAAA
GAACAAGAAGAGTCTGATGAXXXXXXXXXXTTCTTTATTTTAGAACTTTTCAAGATTTTC
GTTAAACTCCTCAAACCTTTTACTACAGTTTCATTCGGGGTTTTCATTTCAAAATTTAAT
TTTACAACTGGTGGGTCAGTTTTGAAATCTTTTGGTTTTAAAGATGATGTTTTCCCTGGT
TTTTTAAAACTTTCCAAGAAATTTCTTTTTTTTTAATAAATAAAAATTATAATTAAAAAT
AAAATTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
sequence update 1997. 4.26
Translated Amino Acid sequence 
lkmtkttttmmlgqtnq*rkeevvaavvevhtllevypmllllllqllllllpi*QPNLN
QKTKKKSGVMKIWVLIFLVTIQHHQQQQQKQQQQQQFQSQHRYLKKRNHMMKMKTWDLVF
LVMKKIINYKGYCLNPYMNQNKYNHNNQNQDHKKNKKSLMEKGIVVLDYLANTMIIVHHH
QSHNHNHSYNLKSNKKDKIKNKKSLM---

---FFILELFKIFVKLLKPFTTVSFGVFISKFNFTTGGSVLKSFGFKDDVFPGFLKLSKK
FLFF**ikiiiknkikikkkkkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iendeddddddawsdepvkkggsggggsgssysfggvpnaitslvtasstpasylaaksq
pkdeeeewgdedmgfdlfgdyptssttttkaaatttvskptslpkkkesydededmgfgl
fgdeedyqlqrvlsqslyeskqiqpqqpksgpqkeqeesdgegdcgfglfgeyddycppp
pksqpqpqlqsqkqqer*dkeqeesd---

---FFILELFKIFVKLLKPFTTVSFGVFISKFNFTTGGSVLKSFGFKDDVFPGFLKLSKK
FLFF**ikiiiknkikikkkkkkkkkkkkkkkkkkkkk

Frame B:
lkmtkttttmmlgqtnq*rkeevvaavvevhtllevypmllllllqllllllpi*QPNLN
QKTKKKSGVMKIWVLIFLVTIQHHQQQQQKQQQQQQFQSQHRYLKKRNHMMKMKTWDLVF
LVMKKIINYKGYCLNPYMNQNKYNHNNQNQDHKKNKKSLMEKGIVVLDYLANTMIIVHHH
QSHNHNHSYNLKSNKKDKIKNKKSLM---

---slf*nfsrfslnssnlllqfhsgfsfqnlilqlvgqf*nllvlkmmfslvf*nfprn
ffffnk*kl*lkiklk*kkkkkkkkkkkkkkkkkkkkk

Frame C:
*k*rrrrrr*clvrrtskerrkwwrr*wkfilfwrctqcyyfscysffyscflfssqist
krrrrrvg**rygf*sfw*lsniinnnnksssnnnsfkanivt*kkgii**r*rhgiwsf
w**rrlsitkgivsili*iktntttttkirttkrtrrv*wrrglwfwiiwrir*llsttt
kvtttttatiskatrkir*rtrrv**---

---lyfrtfqdfr*tpqtfyysfirgfhfki*fynwwvsfeifwf*r*cfpwffktfqei
sfflinknyn*k*n*nkkkkkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS20 (FC-AS20Q) /CSM/FC/FC-AS/FC-AS20Q.Seq.d/                      918   0.0
VHA618 (VHA618Q) /CSM/VH/VHA6-A/VHA618Q.Seq.d/                        511   e-144
AHH574 (AHH574Q) /CSM/AH/AHH5-D/AHH574Q.Seq.d/                         48   2e-04
VHI379 (VHI379Q) /CSM/VH/VHI3-D/VHI379Q.Seq.d/                         40   0.058
SSM778 (SSM778Q) /CSM/SS/SSM7-D/SSM778Q.Seq.d/                         40   0.058
SLJ508 (SLJ508Q) /CSM/SL/SLJ5-A/SLJ508Q.Seq.d/                         40   0.058
SLB654 (SLB654Q) /CSM/SL/SLB6-C/SLB654Q.Seq.d/                         40   0.058
AFL665 (AFL665Q) /CSM/AF/AFL6-C/AFL665Q.Seq.d/                         40   0.058
VHK645 (VHK645Q) /CSM/VH/VHK6-B/VHK645Q.Seq.d/                         38   0.23
VHH394 (VHH394Q) /CSM/VH/VHH3-D/VHH394Q.Seq.d/                         38   0.23
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    46  1e-06  10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    46  6e-05  10
AC006710|AC006710.1 Caenorhabditis elegans clone Y119C1AA, WORKING DRAFT SEQUENCE, 1 unordered pieces.    42  9e-05  8
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36  1e-04  10
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    50  3e-04  9
AW944161|AW944161.1 SD01079.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD01079 3, mRNA sequence.    48  3e-04  2
AJ002383|AJ002383.1 Dictyostelium discoideum mybB gene.           50  3e-04  2
AL160271|AL160271.19 Human DNA sequence from clone RP11-323H21 on chromosome 9q34.1-34.3.    56  8e-04  1
AY061567|AY061567.1 Drosophila melanogaster SD01079 full length cDNA.    48  0.001  2
U00240|U00240.1 Caenorhabditis elegans beta-amyloid protein precursor (APL-1) mRNA complete cds.    46  0.001  2
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006413_3(AC006413|pid:none) Arabidopsis thaliana chromosome 2 ...    35   4.4
EF062496_1(EF062496|pid:none) Artemia franciscana clone 15ME33.0...    33   9.8
(P02402) RecName: Full=60S acidic ribosomal protein P1; AltName:...    33   9.8
protein update 2009. 4.13
PSORT 

 psg: 0.82  gvh: 0.48  alm: 0.30  top: 0.60  tms: 0.07  mit: 0.40  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.08  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for FC-AS20 is nuc
5' end seq. ID FC-AS20F
5' end seq. 
>FC-AS20F.Seq
ATTGAAAATGACGAAGACGACGACGACGATGATGCTTGGTCAGACGAACCAGTAAAGAAA
GGAGGAAGTGGTGGCGGCGGTAGTGGAAGTTCATACTCTTTTGGAGGTGTACCCAATGCT
ATTACTTCTCTTGTTACAGCTTCTTCTACTCCTGCTTCCTATTTAGCAGCCAAATCTCAA
CCAAAAGACGAAGAAGAAGAGTGGGGTGATGAAGATATGGGTTTTGATCTTTTTGGTGAC
TATCCAACATCATCAACAACAACAACAAAAGCAGCAGCAACAACAACAGTTTCAAAGCCA
ACATCGTTACCTAAAAAAAAGGAATCATATGATGAAGATGAAGACATGGGATTTGGTCTT
TTTGGTGATGAAGAAGATTATCAATTACAAAGGGTATTGTCTCAATCCTTATATGAATCA
AAACAAATACAACCACAACAACCAAAATCAGGACCACAAAAAGAACAAGAAGAGTCTGAT
GGAGAAGGGGATTGTGGTTTTGGATTATTTGGCGAATACGATGATTATTGTCCACCACCA
CCAAAGTCACAACCACAACCACAGCTACAATCTCAAAAGCAACAAGAAAGATAAGATAAA
GAACAAGAAGAGTCTGATGA----------
Length of 5' end seq. 620
3' end seq. ID FC-AS20Z
3' end seq. 
>FC-AS20Z.Seq
----------TTCTTTATTTTAGAACTTTTCAAGATTTTCGTTAAACTCCTCAAACCTTT
TACTACAGTTTCATTCGGGGTTTTCATTTCAAAATTTAATTTTACAACTGGTGGGTCAGT
TTTGAAATCTTTTGGTTTTAAAGATGATGTTTTCCCTGGTTTTTTAAAACTTTCCAAGAA
ATTTCTTTTTTTTTAATAAATAAAAATTATAATTAAAAATAAAATTAAAATAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 287
Connected seq. ID FC-AS20P
Connected seq. 
>FC-AS20P.Seq
ATTGAAAATGACGAAGACGACGACGACGATGATGCTTGGTCAGACGAACCAGTAAAGAAA
GGAGGAAGTGGTGGCGGCGGTAGTGGAAGTTCATACTCTTTTGGAGGTGTACCCAATGCT
ATTACTTCTCTTGTTACAGCTTCTTCTACTCCTGCTTCCTATTTAGCAGCCAAATCTCAA
CCAAAAGACGAAGAAGAAGAGTGGGGTGATGAAGATATGGGTTTTGATCTTTTTGGTGAC
TATCCAACATCATCAACAACAACAACAAAAGCAGCAGCAACAACAACAGTTTCAAAGCCA
ACATCGTTACCTAAAAAAAAGGAATCATATGATGAAGATGAAGACATGGGATTTGGTCTT
TTTGGTGATGAAGAAGATTATCAATTACAAAGGGTATTGTCTCAATCCTTATATGAATCA
AAACAAATACAACCACAACAACCAAAATCAGGACCACAAAAAGAACAAGAAGAGTCTGAT
GGAGAAGGGGATTGTGGTTTTGGATTATTTGGCGAATACGATGATTATTGTCCACCACCA
CCAAAGTCACAACCACAACCACAGCTACAATCTCAAAAGCAACAAGAAAGATAAGATAAA
GAACAAGAAGAGTCTGATGA----------TTCTTTATTTTAGAACTTTTCAAGATTTTC
GTTAAACTCCTCAAACCTTTTACTACAGTTTCATTCGGGGTTTTCATTTCAAAATTTAAT
TTTACAACTGGTGGGTCAGTTTTGAAATCTTTTGGTTTTAAAGATGATGTTTTCCCTGGT
TTTTTAAAACTTTCCAAGAAATTTCTTTTTTTTTAATAAATAAAAATTATAATTAAAAAT
AAAATTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
Length of connected seq. 907
Full length Seq ID -
Full length Seq. -
Length of full length seq. -