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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AS19
Library FC
(Link to library)
Clone ID FC-AS19
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15986-1
Original site URL
Representative seq. ID FC-AS19P
(Link to Original site)
Representative DNA sequence 
>FC-AS19 (FC-AS19Q) /CSM/FC/FC-AS/FC-AS19Q.Seq.d/
CAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAACAAAAAAAAACCACCTTCC
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCAAAAAAAAAAAAAAAAAAAACTCCTC
CTTAATTCAATATTCTXXXXXXXXXXTAAGAAGAAAAAAAAAAAAAAAAGAAATTTAAAA
AGAAAAAAAAGAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAAACAACCAACCA
AATCATCGAACCAAAAAATAAACAAAACAAATACGAGTGATAAATAGAAATGAAGCACCA
ACAATCCAAGGTTCGTTTTGGTGATTAATTTTTTTCTTTTTTTTAAAAAAAAAAAAAATA
AATTTAGTTTGAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAGA
TTGTTGATTATAAAAAAAAAA
sequence update 1997. 4.26
Translated Amino Acid sequence 
QKQKQKQKQKQKQNKKKPPSTKKKKKKKKKIQKKKKKKLLLNSIF---

---KKKKKKKRNLKRKKRKKKKKKKKKKKKNNQPNHRTKK*tkqirvinrneaptiqgsf
w*lifffflkkkkinlv*keiqqkhqkikqinvrlliikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
QKQKQKQKQKQKQNKKKPPSTKKKKKKKKKIQKKKKKKLLLNSIF---

---*eekkkkkkfkkkkkkkkkekkkekkkkqptkssnqkinktntsdk*k*stnnprfv
lvinfflffkkkknkfslkrdttktpknqtnkrqivdykkk

Frame B:
knknknknknknktkknhlpqkkkkkkkkkfkkkkkknssliqys---

---KKKKKKKRNLKRKKRKKKKKKKKKKKKNNQPNHRTKK*tkqirvinrneaptiqgsf
w*lifffflkkkkinlv*keiqqkhqkikqinvrlliikkk

Frame C:
ktktktktktktkqkkttfhkkkkkkkkknskkkkkktpp*fni---

---rrkkkkkei*kekkekkkrkkkrkkkkttnqiiepknkqnkye**iemkhqqskvrf
gd*ffsff*kkkk*i*fekrynkntkksnk*tsdc*l*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS19 (FC-AS19Q) /CSM/FC/FC-AS/FC-AS19Q.Seq.d/                      226   2e-58
SSF587 (SSF587Q) /CSM/SS/SSF5-D/SSF587Q.Seq.d/                        202   3e-51
SFJ589 (SFJ589Q) /CSM/SF/SFJ5-D/SFJ589Q.Seq.d/                         42   0.007
FC-BE03 (FC-BE03Q) /CSM/FC/FC-BE/FC-BE03Q.Seq.d/                       42   0.007
CHS208 (CHS208Q) /CSM/CH/CHS2-A/CHS208Q.Seq.d/                         42   0.007
CHO238 (CHO238Q) /CSM/CH/CHO2-B/CHO238Q.Seq.d/                         42   0.007
AFO689 (AFO689Q) /CSM/AF/AFO6-D/AFO689Q.Seq.d/                         42   0.007
AFH652 (AFH652Q) /CSM/AF/AFH6-C/AFH652Q.Seq.d/                         42   0.007
AFD492 (AFD492Q) /CSM/AF/AFD4-D/AFD492Q.Seq.d/                         42   0.007
VSB509 (VSB509Q) /CSM/VS/VSB5-A/VSB509Q.Seq.d/                         40   0.027
own update 2004. 5.31
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U72236|U72236.1 Dictyostelium discoideum ModA (modA) gene, complete cds.   194  6e-46  1
AC140872|AC140872.1 Homo sapiens chromosome 16 clone RP11-1151K24, WORKING DRAFT SEQUENCE, 6 unordered pieces.    40  0.047  2
AC141601|AC141601.1 Homo sapiens chromosome 16 clone RP11-1367O14, WORKING DRAFT SEQUENCE, 5 unordered pieces.    40  0.053  2
AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    36  0.062  3
AL475028|AL475028.1 T. brucei sheared genomic DNA clone 176c08, forward sequence.    38  0.14  2
AC136907|AC136907.2 Rattus norvegicus clone CH230-243M10, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40  0.19  2
AC112259|AC112259.2 Mus musculus chromosome UNK clone RP23-179F7, WORKING DRAFT SEQUENCE, 9 unordered pieces.    40  0.22  4
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    42  0.23  2
AC005375|AC005375.4 Homo sapiens chromosome 17, clone hRPK.388_F_14, complete sequence.    36  0.26  3
BH165489|BH165489.1 ENTTJ59TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38  0.27  2
dna update 2003. 7.11
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 222,932,182
protein update 2009. 4.13
PSORT 

 psg: 0.25  gvh: -0.02  alm: 0.75  top: 0.53  tms: 0.00  mit: 0.54  mip: 0.00
 nuc: 3.82  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for FC-AS19 is nuc
5' end seq. ID FC-AS19F
5' end seq. 
>FC-AS19F.Seq
CAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAACAAAAAAAAACCACCTTCC
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCAAAAAAAAAAAAAAAAAAAACTCCTC
CTTAATTCAATATTCT----------
Length of 5' end seq. 136
3' end seq. ID FC-AS19Z
3' end seq. 
>FC-AS19Z.Seq
----------TAAGAAGAAAAAAAAAAAAAAAAGAAATTTAAAAAGAAAAAAAAGAAAAA
AAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAAACAACCAACCAAATCATCGAACCAAAA
AATAAACAAAACAAATACGAGTGATAAATAGAAATGAAGCACCAACAATCCAAGGTTCGT
TTTGGTGATTAATTTTTTTCTTTTTTTTAAAAAAAAAAAAAATAAATTTAGTTTGAAAAG
AGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAGATTGTTGATTATAAAAA
AAAAA
Length of 3' end seq. 295
Connected seq. ID FC-AS19P
Connected seq. 
>FC-AS19P.Seq
CAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAACAAAAAAAAACCACCTTCC
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTCAAAAAAAAAAAAAAAAAAAACTCCTC
CTTAATTCAATATTCT----------TAAGAAGAAAAAAAAAAAAAAAAGAAATTTAAAA
AGAAAAAAAAGAAAAAAAAAAAAGAAAAAAAAAAAGAAAAAAAAAAAAAACAACCAACCA
AATCATCGAACCAAAAAATAAACAAAACAAATACGAGTGATAAATAGAAATGAAGCACCA
ACAATCCAAGGTTCGTTTTGGTGATTAATTTTTTTCTTTTTTTTAAAAAAAAAAAAAATA
AATTTAGTTTGAAAAGAGATACAACAAAAACACCAAAAAATCAAACAAATAAACGTCAGA
TTGTTGATTATAAAAAAAAAA
Length of connected seq. 431
Full length Seq ID -
Full length Seq. -
Length of full length seq. -