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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AS18
Library FC
(Link to library)
Clone ID FC-AS18
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15937-1
Original site URL
Representative seq. ID FC-AS18P
(Link to Original site)
Representative DNA sequence 
>FC-AS18 (FC-AS18Q) /CSM/FC/FC-AS/FC-AS18Q.Seq.d/
AAACAATGGGAAAAGTATTAATACTTTTTTTATTTGTATTATTATTAATAACTTTTATTA
ATTGTACTAATAATAAAATATTAAACAATGAAAACTCTTCAAATGAAGATAATGTAATAA
ATGTATTTTTAATTCCACACTCTCACTGTGATTTAGGATGGGTACAAACACTAGAAGAAT
ATTATTCAGAAAATGTAACAGTAATTTTAGATAATGTTATAAATACATTAATTAAAGATT
CAAGTAAAAAATTTAATTGGGCAGAGATTTATTATTTTGAAACATGGTGGAATGAACAAT
CATCATTCCTCCAAGCTCAAGTTAGGAATTTAGTAAACAATGGACAATTATATTTTGTTG
GTGGTGGTTGGGCACAAAATGATGAGGGTGCAACTCACTATCAAGCAGTTATCAATCAAA
TGACATTAGGCCACCAATTTTTGTTATCAGAATTTGGCGTGGTTCCAGAGATTGGCTGGC
AGATTGACCCCTTTGGACCATCAACTTTXXXXXXXXXXTAGTAATGAAATTCGAACTCCT
CATTCAATATTATTTGAAAATCCATTACAACCAGTTTATTCATTAATTCCAAACTCAATA
CCAATTGAAAAATATATTGATACTTATAATACACTATTTAAACCATTACAAACTTCATTA
CCATACAATTTACATCTATTAACTTTTACAAAACAATGGATTGATTCACCTTCAATTATA
ATGAGATTAATTAATATTTATGAAATTGGTCAAAGTATTAATTTTTCAAAATCAATTAAT
TTTAATATTGGTAGTGGTGATAATAACAATAACAATAATAATAATAATAATAATGGTTTT
TTAACTCATTATAATATTTCTCAAATTATTGAAACTACATTATCTGCAAATTCTGAATTA
TCAAATCCAACAAATAATTTAGTAATTACTCTCGAACCTTTAGAAATTAAAACATTTTTA
TTAACATTATCACCAAAACAATAAAAATTTTAATAATTATATCTTAAATGTCAAAGAAAA
AAAATAATAATTAAATATTAAAATAAATTTACGAAAAAAA
sequence update 1997. 4.26
Translated Amino Acid sequence 
TMGKVLILFLFVLLLITFINCTNNKILNNENSSNEDNVINVFLIPHSHCDLGWVQTLEEY
YSENVTVILDNVINTLIKDSSKKFNWAEIYYFETWWNEQSSFLQAQVRNLVNNGQLYFVG
GGWAQNDEGATHYQAVINQMTLGHQFLLSEFGVVPEIGWQIDPFGPST---

---SNEIRTPHSILFENPLQPVYSLIPNSIPIEKYIDTYNTLFKPLQTSLPYNLHLLTFT
KQWIDSPSIIMRLINIYEIGQSINFSKSINFNIGSGDNNNNNNNNNNNGFLTHYNISQII
ETTLSANSELSNPTNNLVITLEPLEIKTFLLTLSPKQ*kf**lylkcqrkkiiiky*nkf
tkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kqweky*yffylyyy**lllivliiky*tmktlqmkim**myf*fhtltvi*dgykh*kn
iiqkm*q*f*iml*ih*lkiqvknligqrfiilkhggmnnhhssklklgi**tmdnyill
vvvghkmmrvqltikqlsik*h*atnfcyqnlawfqrlagrltpldhql---

---***nsnssfnii*ksittslfinsklntn*kiy*yl*yti*titnfitiqftsinfy
ktmd*ftfnynein*yl*nwsky*ffkin*f*yw*w***q*q******wffnsl*yfsny
*nyiickf*iiksnk*fsnysrtfrn*nifiniitktikiliiis*mskkknnn*ilk*i
yek

Frame B:
nngksintfficiiinnfy*ly***nikq*klfk*r*cnkcifnstlsl*frmgtntrri
lfrkcnsnfr*cykyin*rfk*ki*lgrdllf*nmve*tiiippsss*efskqwtiifcw
wwlgtk**gcnslsssyqsndirppifviriwrgsrdwlad*plwtinf---

---SNEIRTPHSILFENPLQPVYSLIPNSIPIEKYIDTYNTLFKPLQTSLPYNLHLLTFT
KQWIDSPSIIMRLINIYEIGQSINFSKSINFNIGSGDNNNNNNNNNNNGFLTHYNISQII
ETTLSANSELSNPTNNLVITLEPLEIKTFLLTLSPKQ*kf**lylkcqrkkiiiky*nkf
tkk

Frame C:
TMGKVLILFLFVLLLITFINCTNNKILNNENSSNEDNVINVFLIPHSHCDLGWVQTLEEY
YSENVTVILDNVINTLIKDSSKKFNWAEIYYFETWWNEQSSFLQAQVRNLVNNGQLYFVG
GGWAQNDEGATHYQAVINQMTLGHQFLLSEFGVVPEIGWQIDPFGPST---

---vmkfelliqyylkihynqfih*fqtqyqlknililiihylnhyklhyhtiyiy*llq
nnglihlql**d*lifmklvkvlifqnqlililvvviititiiiiiimvf*liiiflkll
klhylqilnyqiqqii**llsnl*klkhfy*hyhqnnknfnnyilnvkekk**lnikinl
rkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS18 (FC-AS18Q) /CSM/FC/FC-AS/FC-AS18Q.Seq.d/                     1483   0.0
VHL808 (VHL808Q) /CSM/VH/VHL8-A/VHL808Q.Seq.d/                        965   0.0
FC-308 (FC-308Q) /CSM/CG/CG-FC/FC-308Q.Seq.d/                         965   0.0
FC-BC05 (FC-BC05Q) /CSM/FC/FC-BC/FC-BC05Q.Seq.d/                      557   e-157
CHR302 (CHR302Q) /CSM/CH/CHR3-A/CHR302Q.Seq.d/                        557   e-157
VHA186 (VHA186Q) /CSM/VH/VHA1-D/VHA186Q.Seq.d/                        377   e-103
SSG542 (SSG542Q) /CSM/SS/SSG5-B/SSG542Q.Seq.d/                         90   8e-17
SSG534 (SSG534Q) /CSM/SS/SSG5-B/SSG534Q.Seq.d/                         90   8e-17
VFO847 (VFO847Q) /CSM/VF/VFO8-B/VFO847Q.Seq.d/                         42   0.017
VFN643 (VFN643Q) /CSM/VF/VFN6-B/VFN643Q.Seq.d/                         42   0.017
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    72  5e-08  2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38  2e-07  14
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36  5e-07  14
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    38  7e-07  13
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34  1e-06  15
AE014844|AE014844.1 Plasmodium falciparum 3D7 chromosome 12 section 1 of 9 of the complete sequence.    38  1e-06  14
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    34  4e-06  16
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34  5e-06  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34  5e-06  15
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          36  3e-05  16
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YF7) RecName: Full=Alpha-mannosidase B;          EC=3.2.1.24...   306   7e-82
(Q54YC4) RecName: Full=Alpha-mannosidase D;          EC=3.2.1.24...   150   9e-35
AB011474_23(AB011474|pid:none) Arabidopsis thaliana genomic DNA,...   144   4e-33
AB026648_12(AB026648|pid:none) Arabidopsis thaliana genomic DNA,...   144   6e-33
(P34098) RecName: Full=Lysosomal alpha-mannosidase;          Sho...   141   3e-32
AC148217_12(AC148217|pid:none) Medicago truncatula clone mth2-20...   140   5e-32
BC061819_1(BC061819|pid:none) Rattus norvegicus mannosidase 2, a...   140   9e-32
AK004817_1(AK004817|pid:none) Mus musculus adult male lung cDNA,...   139   2e-31
U87240_1(U87240|pid:none) Mus musculus lysosomal alpha-mannosida...   139   2e-31
U29947_1(U29947|pid:none) Mus musculus alpha-D-mannosidase (Man2...   139   2e-31
protein update 2009. 4.13
PSORT 

 psg: 1.01  gvh: 0.77  alm: 0.38  top: 0.27  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	  8.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: mitochondrial

>> prediction for FC-AS18 is exc
5' end seq. ID FC-AS18F
5' end seq. 
>FC-AS18F.Seq
AAACAATGGGAAAAGTATTAATACTTTTTTTATTTGTATTATTATTAATAACTTTTATTA
ATTGTACTAATAATAAAATATTAAACAATGAAAACTCTTCAAATGAAGATAATGTAATAA
ATGTATTTTTAATTCCACACTCTCACTGTGATTTAGGATGGGTACAAACACTAGAAGAAT
ATTATTCAGAAAATGTAACAGTAATTTTAGATAATGTTATAAATACATTAATTAAAGATT
CAAGTAAAAAATTTAATTGGGCAGAGATTTATTATTTTGAAACATGGTGGAATGAACAAT
CATCATTCCTCCAAGCTCAAGTTAGGAATTTAGTAAACAATGGACAATTATATTTTGTTG
GTGGTGGTTGGGCACAAAATGATGAGGGTGCAACTCACTATCAAGCAGTTATCAATCAAA
TGACATTAGGCCACCAATTTTTGTTATCAGAATTTGGCGTGGTTCCAGAGATTGGCTGGC
AGATTGACCCCTTTGGACCATCAACTTT----------
Length of 5' end seq. 508
3' end seq. ID FC-AS18Z
3' end seq. 
>FC-AS18Z.Seq
----------TAGTAATGAAATTCGAACTCCTCATTCAATATTATTTGAAAATCCATTAC
AACCAGTTTATTCATTAATTCCAAACTCAATACCAATTGAAAAATATATTGATACTTATA
ATACACTATTTAAACCATTACAAACTTCATTACCATACAATTTACATCTATTAACTTTTA
CAAAACAATGGATTGATTCACCTTCAATTATAATGAGATTAATTAATATTTATGAAATTG
GTCAAAGTATTAATTTTTCAAAATCAATTAATTTTAATATTGGTAGTGGTGATAATAACA
ATAACAATAATAATAATAATAATAATGGTTTTTTAACTCATTATAATATTTCTCAAATTA
TTGAAACTACATTATCTGCAAATTCTGAATTATCAAATCCAACAAATAATTTAGTAATTA
CTCTCGAACCTTTAGAAATTAAAACATTTTTATTAACATTATCACCAAAACAATAAAAAT
TTTAATAATTATATCTTAAATGTCAAAGAAAAAAAATAATAATTAAATATTAAAATAAAT
TTACGAAAAAAA
Length of 3' end seq. 542
Connected seq. ID FC-AS18P
Connected seq. 
>FC-AS18P.Seq
AAACAATGGGAAAAGTATTAATACTTTTTTTATTTGTATTATTATTAATAACTTTTATTA
ATTGTACTAATAATAAAATATTAAACAATGAAAACTCTTCAAATGAAGATAATGTAATAA
ATGTATTTTTAATTCCACACTCTCACTGTGATTTAGGATGGGTACAAACACTAGAAGAAT
ATTATTCAGAAAATGTAACAGTAATTTTAGATAATGTTATAAATACATTAATTAAAGATT
CAAGTAAAAAATTTAATTGGGCAGAGATTTATTATTTTGAAACATGGTGGAATGAACAAT
CATCATTCCTCCAAGCTCAAGTTAGGAATTTAGTAAACAATGGACAATTATATTTTGTTG
GTGGTGGTTGGGCACAAAATGATGAGGGTGCAACTCACTATCAAGCAGTTATCAATCAAA
TGACATTAGGCCACCAATTTTTGTTATCAGAATTTGGCGTGGTTCCAGAGATTGGCTGGC
AGATTGACCCCTTTGGACCATCAACTTT----------TAGTAATGAAATTCGAACTCCT
CATTCAATATTATTTGAAAATCCATTACAACCAGTTTATTCATTAATTCCAAACTCAATA
CCAATTGAAAAATATATTGATACTTATAATACACTATTTAAACCATTACAAACTTCATTA
CCATACAATTTACATCTATTAACTTTTACAAAACAATGGATTGATTCACCTTCAATTATA
ATGAGATTAATTAATATTTATGAAATTGGTCAAAGTATTAATTTTTCAAAATCAATTAAT
TTTAATATTGGTAGTGGTGATAATAACAATAACAATAATAATAATAATAATAATGGTTTT
TTAACTCATTATAATATTTCTCAAATTATTGAAACTACATTATCTGCAAATTCTGAATTA
TCAAATCCAACAAATAATTTAGTAATTACTCTCGAACCTTTAGAAATTAAAACATTTTTA
TTAACATTATCACCAAAACAATAAAAATTTTAATAATTATATCTTAAATGTCAAAGAAAA
AAAATAATAATTAAATATTAAAATAAATTTACGAAAAAAA
Length of connected seq. 1050
Full length Seq ID -
Full length Seq. -
Length of full length seq. -