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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AS17
Library FC
(Link to library)
Clone ID FC-AS17
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15985-1
Original site URL
Representative seq. ID FC-AS17P
(Link to Original site)
Representative DNA sequence 
>FC-AS17 (FC-AS17Q) /CSM/FC/FC-AS/FC-AS17Q.Seq.d/
AAAATTCAAAATGATTAGAAATACCTTCAAATTAGTTTCAAATATTGCTGTTCGTCCAGC
TTTTTCAAGCACTTTTGTTAGACAACCAATTGTCGCTTCATCAATGATGGTTAGAAACTA
TGGTTCAATTTCAGAAAAAGAAATCACTGATCGTGTTATTGGTGTTGTCTCACAATACGA
CAAAGTCAGTGGTAAAACTGTTACACCAACCACCACTTTCAAAGAACTCGGTCTTGACAG
TTTAGATTCTGCCGATATTTTAGTTGCCGTCGAAGAAGAGTTTGGTATTGAAATTCCAGA
TGAAGAAGCCGATAAAATTACTATCATGTGCTGAAACTATCTCATACCTCAGAAAAACAC
CAACTGCCAAATAAATAAATCAAAAAAATAXXXXXXXXXXAAAAATTAAAAGGAAAAAAA
AAAAAAAAAAAAAAAAAAAACATATAATTGTAAAAAAAAAGAAAAAAACAATAAATTTAT
TTTTTTAATTTATTTTTAATTTTTACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
sequence update 1997. 4.26
Translated Amino Acid sequence 
kfkmirntfklvsniavrpafsstfvrqpivassmmvrnygsisekeitdrvigvvsqyd
kvsgktvtptttfkelgldsldsadilvaveeefgieipdeeadkitimc*NYLIPQKNT
NCQINKSKK---

---KIKRKKKKKKKKKHIIVKKKKKTINLFF*fifnfylkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kiqnd*kylqisfkyccsssffkhfc*ttncrfindg*klwfnfrkrnh*scywccltir
qsqw*ncytnhhfqrtrs*qfrfcryfscrrrrvwy*nsr*rsr*nyyhvlklshtsekh
qlpnk*ikki---

---kn*kekkkkkkkktynckkkeknnkfifliyf*fllkkkkkkkkkkkkkkkk

Frame B:
kfkmirntfklvsniavrpafsstfvrqpivassmmvrnygsisekeitdrvigvvsqyd
kvsgktvtptttfkelgldsldsadilvaveeefgieipdeeadkitimc*NYLIPQKNT
NCQINKSKK---

---KIKRKKKKKKKKKHIIVKKKKKTINLFF*fifnfylkkkkkkkkkkkkkkkk

Frame C:
nsk*leipsn*fqillfvqlfqallldnqlslhq*wletmvqfqkkkslivllvlshntt
ksvvkllhqpplsknsvltv*ilpif*lpskkslvlkfqmkkpikllscaetisylrktp
tak*inqkn---

---klkgkkkkkkkkni*l*kkrkkq*iyffnlflift*kkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS17 (FC-AS17Q) /CSM/FC/FC-AS/FC-AS17Q.Seq.d/                      698   0.0
VSG874 (VSG874Q) /CSM/VS/VSG8-D/VSG874Q.Seq.d/                        682   0.0
VSE649 (VSE649Q) /CSM/VS/VSE6-C/VSE649Q.Seq.d/                        682   0.0
VSD540 (VSD540Q) /CSM/VS/VSD5-B/VSD540Q.Seq.d/                        682   0.0
VSD409 (VSD409Q) /CSM/VS/VSD4-A/VSD409Q.Seq.d/                        682   0.0
VSA275 (VSA275Q) /CSM/VS/VSA2-D/VSA275Q.Seq.d/                        682   0.0
SSF643 (SSF643Q) /CSM/SS/SSF6-B/SSF643Q.Seq.d/                        682   0.0
SSD190 (SSD190Q) /CSM/SS/SSD1-D/SSD190Q.Seq.d/                        680   0.0
VSA659 (VSA659Q) /CSM/VS/VSA6-C/VSA659Q.Seq.d/                        674   0.0
VSD407 (VSD407Q) /CSM/VS/VSD4-A/VSD407Q.Seq.d/                        650   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U32701|U32701.1 Haemophilus influenzae Rd section 16 of 163 of the complete genome.    60  3e-05  1
AL035073|AL035073.7 Human DNA sequence from clone RP5-997O15 on chromosome 20p11.21-12  Contains ESTs, CA repeat (D20S904), STSs and GSSs.    52  6e-05  2
AL359771|AL359771.27 Human DNA sequence from clone CTA-520D8 on chromosome 1.    58  1e-04  1
AC109315|AC109315.3 Homo sapiens chromosome 18, clone RP11-267C16, complete sequence.    56  5e-04  1
AP001353|AP001353.3 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-705O9, WORKING DRAFT SEQUENCE, 13 unordered pieces.    56  5e-04  1
AC020615|AC020615.14 Homo sapiens chromosome 3 clone RP11-357F5, WORKING DRAFT SEQUENCE, 22 unordered pieces.    56  5e-04  1
AL357492|AL357492.4 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-410J19.    58  8e-04  2
BX294163|BX294163.7 Zebrafish DNA sequence from clone DKEY-46D17 in linkage group 20.    44  0.001  5
AX621906|AX621906.1 Sequence 4869 from Patent WO02094868.         54  0.002  1
BD097133|BD097133.1 Novel polypeptides HmrA and HmrB.             54  0.002  1
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954218_153(CR954218|pid:none) Ostreococcus tauri strain OTTH05...    53   6e-06
CR382124_115(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    53   6e-06
(Q10217) RecName: Full=Putative acyl carrier protein, mitochondr...    51   7e-06
AY085236_1(AY085236|pid:none) Arabidopsis thaliana clone 14066 m...    52   8e-06
AC004512_6(AC004512|pid:none) Arabidopsis thaliana chromosome 1 ...    52   8e-06
AX155055_1(AX155055|pid:none) Sequence 101 from Patent WO0138484.      50   5e-05
(P32463) RecName: Full=Acyl carrier protein, mitochondrial;     ...    50   5e-05
CP000597_144(CP000597|pid:none) Ostreococcus lucimarinus CCE9901...    49   1e-04
AC147179_25(AC147179|pid:none) Medicago truncatula clone mth2-14...    48   1e-04
EF147354_1(EF147354|pid:none) Populus trichocarpa clone WS0122_O...    48   1e-04
protein update 2009. 4.13
PSORT 

 psg: 0.54  gvh: 0.04  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.00
 nuc: 1.26  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for FC-AS17 is nuc
5' end seq. ID FC-AS17F
5' end seq. 
>FC-AS17F.Seq
AAAATTCAAAATGATTAGAAATACCTTCAAATTAGTTTCAAATATTGCTGTTCGTCCAGC
TTTTTCAAGCACTTTTGTTAGACAACCAATTGTCGCTTCATCAATGATGGTTAGAAACTA
TGGTTCAATTTCAGAAAAAGAAATCACTGATCGTGTTATTGGTGTTGTCTCACAATACGA
CAAAGTCAGTGGTAAAACTGTTACACCAACCACCACTTTCAAAGAACTCGGTCTTGACAG
TTTAGATTCTGCCGATATTTTAGTTGCCGTCGAAGAAGAGTTTGGTATTGAAATTCCAGA
TGAAGAAGCCGATAAAATTACTATCATGTGCTGAAACTATCTCATACCTCAGAAAAACAC
CAACTGCCAAATAAATAAATCAAAAAAATA----------
Length of 5' end seq. 390
3' end seq. ID FC-AS17Z
3' end seq. 
>FC-AS17Z.Seq
----------AAAAATTAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAACATATAATTG
TAAAAAAAAAGAAAAAAACAATAAATTTATTTTTTTAATTTATTTTTAATTTTTACTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 158
Connected seq. ID FC-AS17P
Connected seq. 
>FC-AS17P.Seq
AAAATTCAAAATGATTAGAAATACCTTCAAATTAGTTTCAAATATTGCTGTTCGTCCAGC
TTTTTCAAGCACTTTTGTTAGACAACCAATTGTCGCTTCATCAATGATGGTTAGAAACTA
TGGTTCAATTTCAGAAAAAGAAATCACTGATCGTGTTATTGGTGTTGTCTCACAATACGA
CAAAGTCAGTGGTAAAACTGTTACACCAACCACCACTTTCAAAGAACTCGGTCTTGACAG
TTTAGATTCTGCCGATATTTTAGTTGCCGTCGAAGAAGAGTTTGGTATTGAAATTCCAGA
TGAAGAAGCCGATAAAATTACTATCATGTGCTGAAACTATCTCATACCTCAGAAAAACAC
CAACTGCCAAATAAATAAATCAAAAAAATA----------AAAAATTAAAAGGAAAAAAA
AAAAAAAAAAAAAAAAAAAACATATAATTGTAAAAAAAAAGAAAAAAACAATAAATTTAT
TTTTTTAATTTATTTTTAATTTTTACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
Length of connected seq. 548
Full length Seq ID -
Full length Seq. -
Length of full length seq. -