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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AS15
Library FC
(Link to library)
Clone ID FC-AS15
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16090-1
Original site URL
Representative seq. ID FC-AS15E
(Link to Original site)
Representative DNA sequence 
>FC-AS15 (FC-AS15Q) /CSM/FC/FC-AS/FC-AS15Q.Seq.d/
ACATGTCATCTAACTACAGTAGGACCTCTCACACTCCACGTCGTCCATTCGAAAAGGAAA
GAATCGACGCTGAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAGTAT
GGAGAGTCCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTCTTG
ATGAAAAAGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACAAAT
TAGGTGTCATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTTCAAG
ATTTCATGGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAATCC
ATCACGCTCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCAACG
TTCCATCTTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCC
CATTAGCTGGTGGTCGTCCAGGTCGTCGTGCCCGTAAAATGGCCAAGAACAACTCATCAA
AAGGTGAAGAAGAAAACTAAATTAATAAAAATAACCATTATATTAGAGAGTAGTATATTG
TAGTAAAAAAAAAAAA
sequence update 1997. 4.15
Translated Amino Acid sequence 
MSSNYSRTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLD
EKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIH
HARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNSSK
GEEEN*inknnhyire*yivvkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
tchlttvgpltlhvvhskrkestln*klsvnlv*rtktkygesntl*pkserllenssfl
mkktqnvslkvqlssvdstn*vswknqrtnsiiflilkfkiswkdvskl*sskmvlpnqs
itlvf*skvdtsvlvnn*stfhlsssvlnpkst*v*lqpph*lvvvqvvvpvkwprtthq
kvkkktklikitiilessil**kkk


Frame B:
hvi*lq*dlshstssirkgknrr*ikscr*iwfkeqkrsmespirfsqnqkgc*rtprs*
*krpktyl*rfsspp*tpqirchgrikeqtrlys*s*ssrfhgktspnfslqkwscqinp
srscfnqr*thpcw*tisqrsifprpc*ipkalrfsfnlpiswwssrsscp*ngqeqlik
r*rrkln**k*ply*rvvycskkkk


Frame C:
MSSNYSRTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLD
EKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIH
HARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARKMAKNNSSK
GEEEN*inknnhyire*yivvkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS15 (FC-AS15Q) /CSM/FC/FC-AS/FC-AS15Q.Seq.d/                     1197   0.0
VHO354 (VHO354Q) /CSM/VH/VHO3-C/VHO354Q.Seq.d/                       1168   0.0
VSH713 (VSH713Q) /CSM/VS/VSH7-A/VSH713Q.Seq.d/                       1156   0.0
FC-BO11 (FC-BO11Q) /CSM/FC/FC-BO/FC-BO11Q.Seq.d/                     1154   0.0
VHJ170 (VHJ170Q) /CSM/VH/VHJ1-C/VHJ170Q.Seq.d/                       1150   0.0
VSF164 (VSF164Q) /CSM/VS/VSF1-C/VSF164Q.Seq.d/                       1130   0.0
VSD109 (VSD109Q) /CSM/VS/VSD1-A/VSD109Q.Seq.d/                       1126   0.0
VSD823 (VSD823Q) /CSM/VS/VSD8-A/VSD823Q.Seq.d/                       1108   0.0
VFA445 (VFA445Q) /CSM/VF/VFA4-B/VFA445Q.Seq.d/                       1108   0.0
VSH205 (VSH205Q) /CSM/VS/VSH2-A/VSH205Q.Seq.d/                       1106   0.0
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X06636|X06636.1 Dictyostelium rp1024 gene for ribosomal protein 1024.  1162   0.0    1
X15384|X15384.1 Dictyostelium discoideum mRNA for V12 gene.       779   0.0    1
AL114484|AL114484.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   5e-15  2
AL113432|AL113432.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   5e-15  2
AL112836|AL112836.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   5e-15  2
AL115396|AL115396.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   5e-15  2
AL115391|AL115391.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   5e-15  2
AL116832|AL116832.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   5e-15  2
AL116249|AL116249.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   5e-15  2
AL116178|AL116178.1 Botrytis cinerea strain T4 cDNA library under conditions of nitrogen deprivation.    72   5e-15  2
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14132) RecName: Full=40S ribosomal protein S9; AltName: Full=4...   316   4e-85
AY857466_1(AY857466|pid:none) Suberites domuncula S9 mRNA, compl...   238   1e-61
AP007167_255(AP007167|pid:none) Aspergillus oryzae RIB40 genomic...   235   9e-61
AM270039_25(AM270039|pid:none) Aspergillus niger contig An02c045...   234   2e-60
AY961563_1(AY961563|pid:none) Lysiphlebus testaceipes ribosomal ...   233   2e-60
(Q9LXG1) RecName: Full=40S ribosomal protein S9-1;  &AK228437_1(...   233   2e-60
AJ749993_1(AJ749993|pid:none) Catharanthus roseus mRNA for 40S r...   232   6e-60
CU633445_35(CU633445|pid:none) Podospora anserina genomic DNA ch...   232   6e-60
DQ630942_1(DQ630942|pid:none) Gryllus rubens S9 ribosomal protei...   232   6e-60
(Q9FLF0) RecName: Full=40S ribosomal protein S9-2;  &AB010077_2(...   232   6e-60
protein update 2009. 7. 2
PSORT 

 psg: 0.50  gvh: 0.20  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.04
 nuc: 0.23  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for FC-AS15 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AS15E
Full length Seq. 
>FC-AS15E.Seq
ACATGTCATCTAACTACAGTAGGACCTCTCACACTCCACGTCGTCCATTCGAAAAGGAAA
GAATCGACGCTGAATTAAAAGTTGTCGGTGAATTTGGTTTAAAGAACAAAAACGAAGTAT
GGAGAGTCCAATACGCTTTAGCCAAAATCAGAAAGGCTGCTAGAGAACTCCTCGTTCTTG
ATGAAAAAGACCCAAAACGTATCTTTGAAGGTTCAGCTCTCCTCCGTAGACTCCACAAAT
TAGGTGTCATGGAAGAATCAAAGAACAAACTCGATTATATTCTTAATCTTAAAGTTCAAG
ATTTCATGGAAAGACGTCTCCAAACTTTAGTCTTCAAAAATGGTCTTGCCAAATCAATCC
ATCACGCTCGTGTTTTAATCAAAGGTAGACACATCCGTGTTGGTAAACAATTAGTCAACG
TTCCATCTTTCCTCGTCCGTGTTGAATCCCAAAAGCACTTAGGTTTAGCTTCAACCTCCC
CATTAGCTGGTGGTCGTCCAGGTCGTCGTGCCCGTAAAATGGCCAAGAACAACTCATCAA
AAGGTGAAGAAGAAAACTAAATTAATAAAAATAACCATTATATTAGAGAGTAGTATATTG
TAGTAAAAAAAAAAAA
Length of full length seq. 616