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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AS13
Library FC
(Link to library)
Clone ID FC-AS13
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15149-1
Original site URL
Representative seq. ID FC-AS13P
(Link to Original site)
Representative DNA sequence 
>FC-AS13 (FC-AS13Q) /CSM/FC/FC-AS/FC-AS13Q.Seq.d/
GTGTATTTATTATATTAAAAAAATTATTAAAAAATAAAAATAAAAATAAAAATAAAAAAC
CCCATCGAAACATAAATCTCACACATTTCAAATTTATACGCACTTTTTTTCATTTAACAA
TAATTTTTTTTTTTTCGTTTTACATCAAAAAAAAAAAAAAAAAAAAAAATTTTCATTTAC
ATTCCCACAAAATAATCAACAATTTATATATACATCCAATTTTAAATATTACATATATAA
TTTTAGCGCAAAATTAAAACAAAATTACATTGAAAATACTTGCAACCTTATTTACAATTT
TATTATTGGTCATTTTTTGTTTTTCAACACCATTTCGTTTACTTGATGGTAATAATTGTT
CATTTAATGCAACCGATGGTAAAATTTATGXXXXXXXXXXATTCTTTTCTGTTACCCAAG
GCACTTTAAAACCTAATGCTTGTAGTGTTCAAAATACTATTATCATTCAATCTAATATGT
TTTGTTCATCTTCACCAAAATCTGGTCTTTCAGGTGGTGATGTTTTCTTAATTATATTTT
TTTGTGGTTTTGGTGCATACTTTATTTTTGGTATTGCAATTCAATGTTATAGAGGAAAGA
GAGGAGCTGAAGCTGTACCAAATATCGAATTCTGGAAAAGTTTTGGTGGATTAATTAAAG
ATGGTGTTGGTTTCATTAAATCCAAGATTTTCCGTACAGCTGCCACTTCTGGTTATCAAG
CAATCTAAACATTTTAATTTTGTAAATTAATATATAGTTAATAAAAACAAAAACAAAAAC
AAAAACAAAACAAAAAAAAATTAAAATTAATTTGGTGTGGAAAGAATGGTGTAGTAAATG
GATTATAGTTTTATTTAAAAATAAAAAAAATATGATGTAATAAATGAATCATAATTTTAC
AATAAAATAAAAAATGGTGAAATAAATGAATCAA
sequence update 1997. 4.26
Translated Amino Acid sequence 
vfiilkkllknknknknkkphrninlthfkfirtffhltiifffsfyikkkkkkknfhlh
shkiinnlyihpilnityiilaqn*NKITLKILATLFTILLLVIFCFSTPFRLLDGNNCS
FNATDGKIY---

---FFSVTQGTLKPNACSVQNTIIIQSNMFCSSSPKSGLSGGDVFLIIFFCGFGAYFIFG
IAIQCYRGKRGAEAVPNIEFWKSFGGLIKDGVGFIKSKIFRTAATSGYQAI*tf*fckli
ys**kqkqkqkqnkkklkliwcgkngvvngl*fylkikki*cnk*iiilq*nkkw*nk*i
Translated Amino Acid sequence (All Frames) 
Frame A:
vylly*kny*kikikikiknpiet*ishisnlyalffi*q*ffffrftskkkkkkkifiy
iptk*stiyiyiqf*ilhi*f*rkiktklh*kylqpylqfyywsffvfqhhfvylmviiv
hlmqpmvkfm---

---ilfcyprhfkt*cl*cskyyyhsi*yvlfiftkiwsfrw*cflnyiflwfwcilyfw
ycnsml*rkers*sctkyrilekfwwin*rwcwfh*iqdfpyschfwlssnlnilil*in
i*liktktktktkqkkikinlvwkewcskwiivlfknkknmm**mnhnftik*kmvk*mn
q

Frame B:
ciyyikkiikk*k*k*k*ktpskhkshtfqiythffsfnnnffffvlhqkkkkkkkfsft
fpqnnqqfiytsnfkyyiynfsaklkqnyientcnliynfiighflffntisft*w**lf
i*cnrw*nl---

---FFSVTQGTLKPNACSVQNTIIIQSNMFCSSSPKSGLSGGDVFLIIFFCGFGAYFIFG
IAIQCYRGKRGAEAVPNIEFWKSFGGLIKDGVGFIKSKIFRTAATSGYQAI*tf*fckli
ys**kqkqkqkqnkkklkliwcgkngvvngl*fylkikki*cnk*iiilq*nkkw*nk*i

Frame C:
vfiilkkllknknknknkkphrninlthfkfirtffhltiifffsfyikkkkkkknfhlh
shkiinnlyihpilnityiilaqn*NKITLKILATLFTILLLVIFCFSTPFRLLDGNNCS
FNATDGKIY---

---sfllpkal*nlmlvvfkillsfnlicfvhlhqnlvfqvvmfs*lyffvvlvhtlflv
lqfnvieereelklyqisnsgkvlvd*lkmvlvslnprfsvqlpllvikqskhfnfvn*y
ivnknknknknktkkn*n*fgvermv**mdysfi*k*kkydvines*fynkikngeines
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS13 (FC-AS13Q) /CSM/FC/FC-AS/FC-AS13Q.Seq.d/                     1003   0.0
VSF483 (VSF483Q) /CSM/VS/VSF4-D/VSF483Q.Seq.d/                        668   0.0
VSA580 (VSA580Q) /CSM/VS/VSA5-D/VSA580Q.Seq.d/                        668   0.0
SSC551 (SSC551Q) /CSM/SS/SSC5-C/SSC551Q.Seq.d/                        668   0.0
VFG542 (VFG542Q) /CSM/VF/VFG5-B/VFG542Q.Seq.d/                        607   e-172
VFJ566 (VFJ566Q) /CSM/VF/VFJ5-C/VFJ566Q.Seq.d/                        599   e-170
VSC502 (VSC502Q) /CSM/VS/VSC5-A/VSC502Q.Seq.d/                        371   e-101
VSJ732 (VSJ732Q) /CSM/VS/VSJ7-B/VSJ732Q.Seq.d/                        355   8e-97
VFG472 (VFG472Q) /CSM/VF/VFG4-C/VFG472Q.Seq.d/                        331   1e-89
VFO469 (VFO469Q) /CSM/VF/VFO4-C/VFO469Q.Seq.d/                         88   3e-16
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL359835|AL359835.10 Human DNA sequence from clone RP11-191J5 on chromosome 1.    34  0.007  8
AL034556|AL034556.4 Plasmodium falciparum MAL3P5.                 38  0.075  4
AC115680|AC115680.2 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.    32  0.14  7
BX545915|BX545915.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48  0.19  1
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    34  0.20  10
AC084732|AC084732.1 Homo sapiens clone RP11-368G2, complete sequence.    46  0.25  3
AC105426|AC105426.4 Homo sapiens BAC clone RP11-794N18 from 4, complete sequence.    36  0.27  4
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    34  0.29  8
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    40  0.45  8
AQ738775|AQ738775.1 HS_5386_B1_A03_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=962 Col=5 Row=B, genomic survey sequence.    36  0.53  3
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86JG6) RecName: Full=Cln5-like protein 1; Flags: Precursor;  &...    59   2e-07
BC157732_1(BC157732|pid:none) Xenopus laevis hypothetical LOC496...    47   9e-04
BC108471_1(BC108471|pid:none) Xenopus laevis mannose-6-phosphate...    46   0.001
BC081319_1(BC081319|pid:none) Xenopus tropicalis MGC89423 protei...    45   0.003
DQ099737_1(DQ099737|pid:none) Takifugu rubripes mannose 6-phosph...    45   0.004
BT044728_1(BT044728|pid:none) Salmo salar clone ssal-rgf-502-030...    44   0.007
AY954824_1(AY954824|pid:none) Arabidopsis thaliana hypothetical ...    39   0.24
AY231418_1(AY231418|pid:none) Arabidopsis thaliana hypothetical ...    39   0.24
(O59745) RecName: Full=Putative mannose 6-phosphate receptor-lik...    39   0.24
AK227563_1(AK227563|pid:none) Arabidopsis thaliana mRNA for hypo...    39   0.24
protein update 2009. 4.13
PSORT 

 psg: 1.00  gvh: 0.79  alm: 0.23  top: 0.27  tms: 0.07  mit: 0.44  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.20  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for FC-AS13 is exc
5' end seq. ID FC-AS13F
5' end seq. 
>FC-AS13F.Seq
GTGTATTTATTATATTAAAAAAATTATTAAAAAATAAAAATAAAAATAAAAATAAAAAAC
CCCATCGAAACATAAATCTCACACATTTCAAATTTATACGCACTTTTTTTCATTTAACAA
TAATTTTTTTTTTTTCGTTTTACATCAAAAAAAAAAAAAAAAAAAAAAATTTTCATTTAC
ATTCCCACAAAATAATCAACAATTTATATATACATCCAATTTTAAATATTACATATATAA
TTTTAGCGCAAAATTAAAACAAAATTACATTGAAAATACTTGCAACCTTATTTACAATTT
TATTATTGGTCATTTTTTGTTTTTCAACACCATTTCGTTTACTTGATGGTAATAATTGTT
CATTTAATGCAACCGATGGTAAAATTTATG----------
Length of 5' end seq. 390
3' end seq. ID FC-AS13Z
3' end seq. 
>FC-AS13Z.Seq
----------ATTCTTTTCTGTTACCCAAGGCACTTTAAAACCTAATGCTTGTAGTGTTC
AAAATACTATTATCATTCAATCTAATATGTTTTGTTCATCTTCACCAAAATCTGGTCTTT
CAGGTGGTGATGTTTTCTTAATTATATTTTTTTGTGGTTTTGGTGCATACTTTATTTTTG
GTATTGCAATTCAATGTTATAGAGGAAAGAGAGGAGCTGAAGCTGTACCAAATATCGAAT
TCTGGAAAAGTTTTGGTGGATTAATTAAAGATGGTGTTGGTTTCATTAAATCCAAGATTT
TCCGTACAGCTGCCACTTCTGGTTATCAAGCAATCTAAACATTTTAATTTTGTAAATTAA
TATATAGTTAATAAAAACAAAAACAAAAACAAAAACAAAACAAAAAAAAATTAAAATTAA
TTTGGTGTGGAAAGAATGGTGTAGTAAATGGATTATAGTTTTATTTAAAAATAAAAAAAA
TATGATGTAATAAATGAATCATAATTTTACAATAAAATAAAAAATGGTGAAATAAATGAA
TCAA
Length of 3' end seq. 534
Connected seq. ID FC-AS13P
Connected seq. 
>FC-AS13P.Seq
GTGTATTTATTATATTAAAAAAATTATTAAAAAATAAAAATAAAAATAAAAATAAAAAAC
CCCATCGAAACATAAATCTCACACATTTCAAATTTATACGCACTTTTTTTCATTTAACAA
TAATTTTTTTTTTTTCGTTTTACATCAAAAAAAAAAAAAAAAAAAAAAATTTTCATTTAC
ATTCCCACAAAATAATCAACAATTTATATATACATCCAATTTTAAATATTACATATATAA
TTTTAGCGCAAAATTAAAACAAAATTACATTGAAAATACTTGCAACCTTATTTACAATTT
TATTATTGGTCATTTTTTGTTTTTCAACACCATTTCGTTTACTTGATGGTAATAATTGTT
CATTTAATGCAACCGATGGTAAAATTTATG----------ATTCTTTTCTGTTACCCAAG
GCACTTTAAAACCTAATGCTTGTAGTGTTCAAAATACTATTATCATTCAATCTAATATGT
TTTGTTCATCTTCACCAAAATCTGGTCTTTCAGGTGGTGATGTTTTCTTAATTATATTTT
TTTGTGGTTTTGGTGCATACTTTATTTTTGGTATTGCAATTCAATGTTATAGAGGAAAGA
GAGGAGCTGAAGCTGTACCAAATATCGAATTCTGGAAAAGTTTTGGTGGATTAATTAAAG
ATGGTGTTGGTTTCATTAAATCCAAGATTTTCCGTACAGCTGCCACTTCTGGTTATCAAG
CAATCTAAACATTTTAATTTTGTAAATTAATATATAGTTAATAAAAACAAAAACAAAAAC
AAAAACAAAACAAAAAAAAATTAAAATTAATTTGGTGTGGAAAGAATGGTGTAGTAAATG
GATTATAGTTTTATTTAAAAATAAAAAAAATATGATGTAATAAATGAATCATAATTTTAC
AATAAAATAAAAAATGGTGAAATAAATGAATCAA
Length of connected seq. 924
Full length Seq ID -
Full length Seq. -
Length of full length seq. -