NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AS12
Library FC
(Link to library)
Clone ID FC-AS12
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15984-1
Original site URL
Representative seq. ID FC-AS12P
(Link to Original site)
Representative DNA sequence 
>FC-AS12 (FC-AS12Q) /CSM/FC/FC-AS/FC-AS12Q.Seq.d/
CAAAACCACAATTATCATATTTTAAAGTTAGAGCATTAGGTCAATTCCCACGTGTTTTAT
TATCATATCTTTCAATTGACTATGATAATAACTATATTGATAAAATTGATGAAAATATTA
TTGATGATCTTAAATATGGACAACTTCCATTATATACAGATAGCAATGGTTTCAAATTAG
TACAATCAATGGCAATTTCAAAATATATTGCATCTCAACATGATTTCGTTGGTAAAACTC
CAGAAGAAAAAGCTTTGGTCGATGAAACACTCGCTGCTGTCAATATTGATGTTTTTACTT
TTATCATTAGAGTATTCAGAGGTGTTGAAGAAAAAGAAAAAATCCAAGAAATTATTATAC
CAAGATTTTTCGCAAAATGGAATCAAATTTTAGGTGAAAAGAAATATCTTGCAGGTGGTA
ATTCTTACACTTTGGCTGATTTATATGTTTATGTTGCTTATGAATACATTGGTTATGTTT
TACCATXXXXXXXXXXAATTGCATTGTTCCCCATGTTGGGAATAGTAATGTTACAGTTAC
AGTAACCCCAAATTGTTATTCCTATTCATCATCTTCAAGTTCAATTCAGCCCTTTAATGT
TGAAAACGAAATAACCATTGGTAGTGGTGATGAAAATATCGATAGGACTAGTTACAATTA
CAACAATTATTACAACAACAATTATAATAGTTACAACGTAAATATCTGTTGGAACAATTC
AAATTTTAATGTTAATGAAAATAATGGTGGCGATAACAATAATGATTACAATAATGATAA
TGATTCTTAAATAATAAAACAAATCTCTAGGTGATAAAAAAAATTTTTTTTCTTTTTGTA
AAATAATAATTTAATAAAAATCCTTTTTTTTTTTTTTTATTCCCCCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAA
sequence update 1997. 4.26
Translated Amino Acid sequence 
KPQLSYFKVRALGQFPRVLLSYLSIDYDNNYIDKIDENIIDDLKYGQLPLYTDSNGFKLV
QSMAISKYIASQHDFVGKTPEEKALVDETLAAVNIDVFTFIIRVFRGVEEKEKIQEIIIP
RFFAKWNQILGEKKYLAGGNSYTLADLYVYVAYEYIGYVLP---

---NCIVPHVGNSNVTVTVTPNCYSYSSSSSSIQPFNVENEITIGSGDENIDRTSYNYNN
YYNNNYNSYNVNICWNNSNFNVNENNGGDNNNDYNNDNDS*iikqisr**kkffffl*nn
nlikilffffyspkkkkkkkkkkkkknkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qnhnyhilkleh*vnshvfyyhifqltmiitiliklmkillmilnmdnfhyiqiamvsn*
ynqwqfqnilhlnmislvklqkkklwsmkhsllsilmflllsleysevlkkkkkskklly
qdfsqngikf*vkrnilqvviltlwliymfmllmntlvmfyh---

---NCIVPHVGNSNVTVTVTPNCYSYSSSSSSIQPFNVENEITIGSGDENIDRTSYNYNN
YYNNNYNSYNVNICWNNSNFNVNENNGGDNNNDYNNDNDS*iikqisr**kkffffl*nn
nlikilffffyspkkkkkkkkkkkkknkkkk

Frame B:
kttiiif*s*sirsiptcfiiisfn*l***ly**n**kyy**s*iwttsiiyr*qwfqis
tingnfkiycist*frw*nsrrksfgr*ntrccqy*cfyfyh*siqrc*rkrknprnyyt
kifrkmesnfr*keiscrw*flhfg*ficlccl*ihwlcft---

---ialfpmlgivmlqlq*pqivipihhlqvqfsplmlktk*plvvvmkisiglvtitti
itttiiivtt*isvgtiqilmlmkimvaitimitimimilk**nkslgdkknffsfckii
i**ksfffffippkkkkkkkkkkkkktkkkk

Frame C:
KPQLSYFKVRALGQFPRVLLSYLSIDYDNNYIDKIDENIIDDLKYGQLPLYTDSNGFKLV
QSMAISKYIASQHDFVGKTPEEKALVDETLAAVNIDVFTFIIRVFRGVEEKEKIQEIIIP
RFFAKWNQILGEKKYLAGGNSYTLADLYVYVAYEYIGYVLP---

---lhcspcwe**cysysnpkllflfiifkfnsal*c*krnnhw*w**kyr*d*lqlqql
lqqql**lqrkylleqfkf*c**k*wwr*q**lq****flnnktnl*vikkifflfvk**
fnknpfffflfpqkkkkkkkkkkkkkqkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS12 (FC-AS12Q) /CSM/FC/FC-AS/FC-AS12Q.Seq.d/                     1501   0.0
VSB879 (VSB879Q) /CSM/VS/VSB8-D/VSB879Q.Seq.d/                        876   0.0
VSF414 (VSF414Q) /CSM/VS/VSF4-A/VSF414Q.Seq.d/                        864   0.0
VSB485 (VSB485Q) /CSM/VS/VSB4-D/VSB485Q.Seq.d/                        813   0.0
VSD742 (VSD742Q) /CSM/VS/VSD7-B/VSD742Q.Seq.d/                        731   0.0
VSE537 (VSE537Q) /CSM/VS/VSE5-B/VSE537Q.Seq.d/                        670   0.0
VSE486 (VSE486Q) /CSM/VS/VSE4-D/VSE486Q.Seq.d/                        668   0.0
SSC544 (SSC544Q) /CSM/SS/SSC5-B/SSC544Q.Seq.d/                        660   0.0
SSH345 (SSH345Q) /CSM/SS/SSH3-B/SSH345Q.Seq.d/                        609   e-173
SSJ529 (SSJ529Q) /CSM/SS/SSJ5-B/SSJ529Q.Seq.d/                        507   e-143
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    34  4e-04  12
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    50  4e-04  9
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    46  5e-04  9
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    50  7e-04  11
AC004710|AC004710.3 Plasmodium falciparum chromosome 12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    50  8e-04  8
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          50  0.001  10
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           50  0.001  10
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          44  0.003  12
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    34  0.004  10
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    36  0.005  7
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54VI4) RecName: Full=Putative glutathione S-transferase alpha-...   254   2e-66
(Q55FF3) RecName: Full=Putative glutathione S-transferase alpha-...   135   1e-30
(Q86AU1) RecName: Full=Putative glutathione S-transferase alpha-...   117   4e-25
(Q556G3) RecName: Full=Putative glutathione S-transferase alpha-...   102   2e-20
(Q54QV7) RecName: Full=Putative glutathione S-transferase alpha-...    86   2e-15
EU853672_1(EU853672|pid:none) Fasciola hepatica glutathione tran...    64   9e-09
(P31671) RecName: Full=Glutathione S-transferase class-mu 26 kDa...    60   8e-08
(P31670) RecName: Full=Glutathione S-transferase class-mu 26 kDa...    58   4e-07
(P56598) RecName: Full=Glutathione S-transferase class-mu 26 kDa...    57   9e-07
EU518245_1(EU518245|pid:none) Thais clavigera glutathione S-tran...    57   1e-06
protein update 2009. 4.13
PSORT 

 psg: 0.70  gvh: 0.38  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for FC-AS12 is nuc
5' end seq. ID FC-AS12F
5' end seq. 
>FC-AS12F.Seq
CAAAACCACAATTATCATATTTTAAAGTTAGAGCATTAGGTCAATTCCCACGTGTTTTAT
TATCATATCTTTCAATTGACTATGATAATAACTATATTGATAAAATTGATGAAAATATTA
TTGATGATCTTAAATATGGACAACTTCCATTATATACAGATAGCAATGGTTTCAAATTAG
TACAATCAATGGCAATTTCAAAATATATTGCATCTCAACATGATTTCGTTGGTAAAACTC
CAGAAGAAAAAGCTTTGGTCGATGAAACACTCGCTGCTGTCAATATTGATGTTTTTACTT
TTATCATTAGAGTATTCAGAGGTGTTGAAGAAAAAGAAAAAATCCAAGAAATTATTATAC
CAAGATTTTTCGCAAAATGGAATCAAATTTTAGGTGAAAAGAAATATCTTGCAGGTGGTA
ATTCTTACACTTTGGCTGATTTATATGTTTATGTTGCTTATGAATACATTGGTTATGTTT
TACCAT----------
Length of 5' end seq. 486
3' end seq. ID FC-AS12Z
3' end seq. 
>FC-AS12Z.Seq
----------AATTGCATTGTTCCCCATGTTGGGAATAGTAATGTTACAGTTACAGTAAC
CCCAAATTGTTATTCCTATTCATCATCTTCAAGTTCAATTCAGCCCTTTAATGTTGAAAA
CGAAATAACCATTGGTAGTGGTGATGAAAATATCGATAGGACTAGTTACAATTACAACAA
TTATTACAACAACAATTATAATAGTTACAACGTAAATATCTGTTGGAACAATTCAAATTT
TAATGTTAATGAAAATAATGGTGGCGATAACAATAATGATTACAATAATGATAATGATTC
TTAAATAATAAAACAAATCTCTAGGTGATAAAAAAAATTTTTTTTCTTTTTGTAAAATAA
TAATTTAATAAAAATCCTTTTTTTTTTTTTTTATTCCCCCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAA
Length of 3' end seq. 445
Connected seq. ID FC-AS12P
Connected seq. 
>FC-AS12P.Seq
CAAAACCACAATTATCATATTTTAAAGTTAGAGCATTAGGTCAATTCCCACGTGTTTTAT
TATCATATCTTTCAATTGACTATGATAATAACTATATTGATAAAATTGATGAAAATATTA
TTGATGATCTTAAATATGGACAACTTCCATTATATACAGATAGCAATGGTTTCAAATTAG
TACAATCAATGGCAATTTCAAAATATATTGCATCTCAACATGATTTCGTTGGTAAAACTC
CAGAAGAAAAAGCTTTGGTCGATGAAACACTCGCTGCTGTCAATATTGATGTTTTTACTT
TTATCATTAGAGTATTCAGAGGTGTTGAAGAAAAAGAAAAAATCCAAGAAATTATTATAC
CAAGATTTTTCGCAAAATGGAATCAAATTTTAGGTGAAAAGAAATATCTTGCAGGTGGTA
ATTCTTACACTTTGGCTGATTTATATGTTTATGTTGCTTATGAATACATTGGTTATGTTT
TACCAT----------AATTGCATTGTTCCCCATGTTGGGAATAGTAATGTTACAGTTAC
AGTAACCCCAAATTGTTATTCCTATTCATCATCTTCAAGTTCAATTCAGCCCTTTAATGT
TGAAAACGAAATAACCATTGGTAGTGGTGATGAAAATATCGATAGGACTAGTTACAATTA
CAACAATTATTACAACAACAATTATAATAGTTACAACGTAAATATCTGTTGGAACAATTC
AAATTTTAATGTTAATGAAAATAATGGTGGCGATAACAATAATGATTACAATAATGATAA
TGATTCTTAAATAATAAAACAAATCTCTAGGTGATAAAAAAAATTTTTTTTCTTTTTGTA
AAATAATAATTTAATAAAAATCCTTTTTTTTTTTTTTTATTCCCCCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAA
Length of connected seq. 931
Full length Seq ID -
Full length Seq. -
Length of full length seq. -