>FC-AS11 (FC-AS11Q) /CSM/FC/FC-AS/FC-AS11Q.Seq.d/
XXXXXXXXXXATTTGCCCCATCCATCCCAGCCGAAATCAGAAGCACCGCTGCCAAAAAAG
TTCAACAAAAAGTTGCTCTCCGTAAATCAATCACCCCAGGTACCGTCCTCATCATCCTTG
CTGGTCGTTTCGCTGGTAAACGTGTTGTTGCCTTAAAACAATTAGACTCTGGTTTAATTT
TAATCACTGGTCCATTCAAAGTTAACGGTGTCCCATTACGTCGTATTGATCAAAGATACG
TCATTGCCACCTCAACTAAAATCGACGTCTCAAGTGTTAAAGTTGCTGCCACCATCAACG
ACGCTTACTTTGCCGCTGAAAAGAAATCAACCACTAAATCTGAAGGTGCTTTCTTCAGTG
ACGAAAAGAAAGCTGAAAAGAAGAAAATCGCCGACTCACGTGTTGCTGACCAAAAATCCG
TTGACTCTGCAATCTTAGCTGTCCTCAAGAAAGAAAAATTCTTAACTGTTTACTTAAAGA
CTAAATTCTACTTGAAGAAAGGTGAATTCCCACATCAACTCAAATTCTAAATAAACTTTT
TTTCTCTTAAATCCTCTTGCAATAGAAAATAATATATAAAAAAAAAAAAACTTTTAAAAA
AAA

---FAPSIPAEIRSTAAKKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLIL
ITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSD
EKKAEKKKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF*inff
slksscnrk*yikkkkllkk

Frame A:
---FAPSIPAEIRSTAAKKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLIL
ITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSD
EKKAEKKKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF*inff
slksscnrk*yikkkkllkk


Frame B:
---lphpsqpkseaplpkkfnkkllsvnqspqvpssssllvvslvnvllp*nn*tlv*f*
slvhskltvshyvvlikdtslppqlkstsqvlkllppsttltlplkrnqplnlkvlssvt
krklkrrkspthvlltknpltlqs*lssrkkns*lft*rlnst*rkvnshinsnsk*tff
llnplaienni*kkknf*kk


Frame C:
---cpihpsrnqkhrcqksstkscsp*inhpryrphhpcwsfrw*tccclktirlwfnfn
hwsiqs*rcpitsy*skirhchln*nrrlkc*scchhqrrllcr*keinh*i*rcflq*r
kes*keenrrltcc*pkir*lcnlscpqerkilncllkd*illeer*iptstqilnklff
s*illq*kiiykkkktfkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS11 (FC-AS11Q) /CSM/FC/FC-AS/FC-AS11Q.Seq.d/                     1082   0.0
FC-AN08 (FC-AN08Q) /CSM/FC/FC-AN/FC-AN08Q.Seq.d/                     1072   0.0
FC-236 (FC-236Q) /CSM/CG/CG-FC/FC-236Q.Seq.d/                        1072   0.0
FC-AU17 (FC-AU17Q) /CSM/FC/FC-AU/FC-AU17Q.Seq.d/                     1066   0.0
VHA502 (VHA502Q) /CSM/VH/VHA5-A/VHA502Q.Seq.d/                       1045   0.0
VFC822 (VFC822Q) /CSM/VF/VFC8-A/VFC822Q.Seq.d/                       1043   0.0
VFB624 (VFB624Q) /CSM/VF/VFB6-A/VFB624Q.Seq.d/                       1043   0.0
SSL471 (SSL471Q) /CSM/SS/SSL4-C/SSL471Q.Seq.d/                        509   e-143
VSK215 (VSK215Q) /CSM/VS/VSK2-A/VSK215Q.Seq.d/                         38   0.15
VSJ824 (VSJ824Q) /CSM/VS/VSJ8-A/VSJ824Q.Seq.d/                         38   0.15

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL441103|AL441103.1 T3 end of clone BD0AA016G11 of library BD0AA from strain CBS 94 of  Candida tropicalis.    54  1e-07  3
AL399924|AL399924.1 T3 end of clone AS0AA018C09 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    46  1e-07  3
AL401651|AL401651.1 T3 end of clone AS0AA029B10 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    54  2e-04  2
AL427822|AL427822.1 clone BA0AB021H01 of library BA0AB from strain CLIB 210 of  Kluyveromyces lactis.    42  0.015  3
BW309958|BW309958.1 Ciona intestinalis cDNA, clone:ciht005o03, 5' end, single read.    42  0.015  2
BE429301|BE429301.1 MTD016.F03F990621 ITEC MTD Durum Wheat Root Library Triticum turgidum subsp. durum cDNA clone MTD016.F03, mRNA sequence.    42  0.016  2
BW221688|BW221688.1 Ciona intestinalis cDNA, clone:cilv047b23, 5' end, single read.    42  0.018  2
BW154458|BW154458.1 Ciona intestinalis cDNA, clone:rcigd023j08, 3' end, single read.    42  0.019  2
BW067840|BW067840.1 Ciona intestinalis cDNA, clone:rcicl103p10, 3' end, single read.    42  0.020  2
BW067538|BW067538.1 Ciona intestinalis cDNA, clone:rcicl102p10, 3' end, single read.    42  0.020  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54D63) RecName: Full=60S ribosomal protein L6;                      290   3e-77
AE017345_308(AE017345|pid:none) Cryptococcus neoformans var. neo...   155   6e-37
AJ011715_1(AJ011715|pid:none) Cyanophora paradoxa mRNA for 60S r...   153   4e-36
AM920428_888(AM920428|pid:none) Penicillium chrysogenum Wisconsi...   150   2e-35
BT033754_1(BT033754|pid:none) Zea mays full-length cDNA clone ZM...   147   2e-34
AJ390506_1(AJ390506|pid:none) Candida albicans mRNA for ribosoma...   146   4e-34
AM474653_2(AM474653|pid:none) Vitis vinifera contig VV78X195508....   145   6e-34
BT067603_1(BT067603|pid:none) Zea mays full-length cDNA clone ZM...   145   6e-34
AF517879_1(AF517879|pid:none) Griffithsia japonica isolate Gj550...   145   8e-34
AY857417_1(AY857417|pid:none) Suberites domuncula L6 mRNA, compl...   143   3e-33

 psg: 0.61  gvh: 0.41  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for FC-AS11 is cyt

>FC-AS11Z.Seq
----------ATTTGCCCCATCCATCCCAGCCGAAATCAGAAGCACCGCTGCCAAAAAAG
TTCAACAAAAAGTTGCTCTCCGTAAATCAATCACCCCAGGTACCGTCCTCATCATCCTTG
CTGGTCGTTTCGCTGGTAAACGTGTTGTTGCCTTAAAACAATTAGACTCTGGTTTAATTT
TAATCACTGGTCCATTCAAAGTTAACGGTGTCCCATTACGTCGTATTGATCAAAGATACG
TCATTGCCACCTCAACTAAAATCGACGTCTCAAGTGTTAAAGTTGCTGCCACCATCAACG
ACGCTTACTTTGCCGCTGAAAAGAAATCAACCACTAAATCTGAAGGTGCTTTCTTCAGTG
ACGAAAAGAAAGCTGAAAAGAAGAAAATCGCCGACTCACGTGTTGCTGACCAAAAATCCG
TTGACTCTGCAATCTTAGCTGTCCTCAAGAAAGAAAAATTCTTAACTGTTTACTTAAAGA
CTAAATTCTACTTGAAGAAAGGTGAATTCCCACATCAACTCAAATTCTAAATAAACTTTT
TTTCTCTTAAATCCTCTTGCAATAGAAAATAATATATAAAAAAAAAAAAACTTTTAAAAA
AAA