>FC-AS09 (FC-AS09Q) /CSM/FC/FC-AS/FC-AS09Q.Seq.d/
AAATTATTTATAACAATAACACCAAATTTAGAAAAATTATTACATAATGAAATTAAAGAT
ATTTTAAGAACAAATAAATTAACGTTACCAAAATTTCAAGTTTTTGAAGGTGGTATTGAA
ATTGATTTAACAAAGGATCCAAATATAAGTGAACAAGAAAAAGAATATTATTTATGGTCA
ATTTCAAATTGTAGTAGATTAGCAGAATCGATTAGAATTAGAGTAGGTTTATCATTTCCA
TGTAAAAATTTCAGTCAATTTAATATTAATTTAGAGAAATTAGATTATAAAACCTATTTT
CCAACATCATCAATCGAACCACAAGTGGCGGTTAGTTGTAATGCTTCAACATTGTATCAT
ACAAATGCAATTAAAGAAAGATTTATTAAACATTTTAATAATTCAATAAAAGATAAAATA
TCAATCGATATAAATTATTCAAAATTTAXXXXXXXXXXTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAA

KLFITITPNLEKLLHNEIKDILRTNKLTLPKFQVFEGGIEIDLTKDPNISEQEKEYYLWS
ISNCSRLAESIRIRVGLSFPCKNFSQFNINLEKLDYKTYFPTSSIEPQVAVSCNASTLYH
TNAIKERFIKHFNNSIKDKISIDINYSKF---

---LKKKKKKKKKKKKKKKQKK

Frame A:
KLFITITPNLEKLLHNEIKDILRTNKLTLPKFQVFEGGIEIDLTKDPNISEQEKEYYLWS
ISNCSRLAESIRIRVGLSFPCKNFSQFNINLEKLDYKTYFPTSSIEPQVAVSCNASTLYH
TNAIKERFIKHFNNSIKDKISIDINYSKF---

---LKKKKKKKKKKKKKKKQKK

Frame B:
nyl*q*hqi*knyyimklkif*eqin*ryqnfkflkvvlkli*qriqi*vnkkkniiygq
fqivvd*qnrlele*vyhfhvkisvnlili*rn*iikpifqhhqsnhkwrlvvmlqhcii
qmqlkkdllniliiq*kikyqsi*iiqnl---

---*kkkkkkkkkkkkkknkkk

Frame C:
iiynnntkfrkiit**n*ryfknk*invtkissf*rwy*n*fnkgskyk*trkrilfmvn
fkl**isrid*n*srfiism*kfqsi*y*freirl*nlfsniinrttsgg*l*cfnivsy
kcn*rkiy*tf**fnkr*ninryklfki---

---kkkkkkkkkkkkkkktkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS09 (FC-AS09Q) /CSM/FC/FC-AS/FC-AS09Q.Seq.d/                      888   0.0
VFB593 (VFB593Q) /CSM/VF/VFB5-D/VFB593Q.Seq.d/                         42   0.008
VFB535 (VFB535Q) /CSM/VF/VFB5-B/VFB535Q.Seq.d/                         42   0.008
SFL425 (SFL425Q) /CSM/SF/SFL4-B/SFL425Q.Seq.d/                         42   0.008
AFB521 (AFB521Q) /CSM/AF/AFB5-A/AFB521Q.Seq.d/                         42   0.008
VSG785 (VSG785Q) /CSM/VS/VSG7-D/VSG785Q.Seq.d/                         40   0.032
VSD417 (VSD417Q) /CSM/VS/VSD4-A/VSD417Q.Seq.d/                         40   0.032
SLH665 (SLH665Q) /CSM/SL/SLH6-C/SLH665Q.Seq.d/                         40   0.032
SLH352 (SLH352Q) /CSM/SL/SLH3-C/SLH352Q.Seq.d/                         40   0.032
SLH131 (SLH131Q) /CSM/SL/SLH1-B/SLH131Q.Seq.d/                         40   0.032

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    34  7e-04  13
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    38  0.002  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          38  0.003  13
AC092329|AC092329.3 Homo sapiens chromosome 19 clone RP11-15H20, complete sequence.    40  0.003  11
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          34  0.006  12
AL031744|AL031744.8 Plasmodium falciparum DNA from MAL1P1.        34  0.010  10
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    32  0.010  14
AE015940|AE015940.1 Clostridium tetani E88, section 5 of 10 of the complete genome.    32  0.014  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34  0.030  15
AL034557|AL034557.8 Plasmodium falciparum MAL4P1.                 34  0.034  13

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014185_256(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    50   3e-05
AM055943_176(AM055943|pid:none) Toxoplasma gondii RH, genomic DN...    44   0.002
AM910988_109(AM910988|pid:none) Plasmodium knowlesi strain H chr...    41   0.015
AM180355_1836(AM180355|pid:none) Clostridium difficile 630 compl...    36   0.47
Z69902_11(Z69902|pid:none) Caenorhabditis elegans Cosmid C47D12,...    36   0.61
FJ430564_18(FJ430564|pid:none) Bacillus cereus strain UW85 zwitt...    36   0.61
(P52709) RecName: Full=Threonyl-tRNA synthetase, cytoplasmic;   ...    36   0.61
CP000387_1766(CP000387|pid:none) Streptococcus sanguinis SK36, c...    34   2.3
CP001129_1513(CP001129|pid:none) Streptococcus equi subsp. zooep...    33   4.0
CR940348_878(CR940348|pid:none) Theileria annulata strain Ankara...    33   4.0

 psg: 0.50  gvh: 0.17  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.77  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for FC-AS09 is nuc

>FC-AS09F.Seq
AAATTATTTATAACAATAACACCAAATTTAGAAAAATTATTACATAATGAAATTAAAGAT
ATTTTAAGAACAAATAAATTAACGTTACCAAAATTTCAAGTTTTTGAAGGTGGTATTGAA
ATTGATTTAACAAAGGATCCAAATATAAGTGAACAAGAAAAAGAATATTATTTATGGTCA
ATTTCAAATTGTAGTAGATTAGCAGAATCGATTAGAATTAGAGTAGGTTTATCATTTCCA
TGTAAAAATTTCAGTCAATTTAATATTAATTTAGAGAAATTAGATTATAAAACCTATTTT
CCAACATCATCAATCGAACCACAAGTGGCGGTTAGTTGTAATGCTTCAACATTGTATCAT
ACAAATGCAATTAAAGAAAGATTTATTAAACATTTTAATAATTCAATAAAAGATAAAATA
TCAATCGATATAAATTATTCAAAATTTA----------