FC-AS08
Library FC
(Link to library)
Clone ID FC-AS08
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16491-1
Original site URL
Representative seq. ID FC-AS08Z
(Link to Original site)
Representative DNA sequence
>FC-AS08 (FC-AS08Q) /CSM/FC/FC-AS/FC-AS08Q.Seq.d/
XXXXXXXXXXAACTCCGTTCATTAATCCACAAATGGTCCACCTTGATCGAATGTTTTGTT
GATGTTAAGACCACTGATGGTTATTTCCTCCGTGTCTTTGCCATCTGTTTCACCAAAAAG
GGTGAATCCCAAAAGAAAAAGACCTCATACGCCAAGACCTCCCGTGTTAAGGCTATCCGT
AAGAAGATGGTTGACATTTTAACCGAAACCGTTTCATCCAACGACCTCAAAACCGTTGTT
GACTATTTAATTGGTGTCTCATTAAACGGTGTTACCACTAACGCCTTTGGTTTTGCCCCA
ACCCTCGCTGAAAAAATCAGAATCGAAGGTTCATCAATCTTCCCAATCCACAACGTTTTC
ATCAGAAAGGTTAAAGTCCTCAAGACTCCAAAAGTTGATGCTGCTAAATTATTTGAACTC
TATGCTTCATTTGCCACCTCAACCATCGCCCCAACTGAAGAAGTAGGTACCGCTGTTGAA
AGAACTGAAGAAACCACCACCACCGCTTAAAAAAAAATAAAATAATTCCTTATTTTTAAA
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 4.15
Translated Amino Acid sequence
---LRSLIHKWSTLIECFVDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRK
KMVDILTETVSSNDLKTVVDYLIGVSLNGVTTNAFGFAPTLAEKIRIEGSSIFPIHNVFI
RKVKVLKTPKVDAAKLFELYASFATSTIAPTEEVGTAVERTEETTTTA*kkik*flifkn
kkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---tpfinpqmvhldrmfc*c*dh*wlfppclchlfhqkg*ipkekdlirqdlpc*gyp*
edg*hfnrnrfiqrpqnrc*lfnwclikrcyh*rlwfcpnpr*knqnrrfinlpnpqrfh
qkg*spqdsks*cc*ii*tlcfichlnhrpn*rsryrc*kn*rnhhhrlkknkiipyf*k
*kkkkkkkkkkkk


Frame B:
---LRSLIHKWSTLIECFVDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRK
KMVDILTETVSSNDLKTVVDYLIGVSLNGVTTNAFGFAPTLAEKIRIEGSSIFPIHNVFI
RKVKVLKTPKVDAAKLFELYASFATSTIAPTEEVGTAVERTEETTTTA*kkik*flifkn
kkkkkkkkkkkkk


Frame C:
---svh*stngpp*snvllmlrplmvissvslpsvspkrvnpkrkrphtprppvlrlsvr
rwltf*pkpfhpttskpllti*lvsh*tvlpltplvlpqpslkkseskvhqssqsttfss
erlkssrlqklmllnylnsmlhlppqpspqlkk*vpllkelkkpppplkkk*nnslflki
kkkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AS08 (FC-AS08Q) /CSM/FC/FC-AS/FC-AS08Q.Seq.d/ 991 0.0
VSC455 (VSC455Q) /CSM/VS/VSC4-C/VSC455Q.Seq.d/ 952 0.0
VSA592 (VSA592Q) /CSM/VS/VSA5-D/VSA592Q.Seq.d/ 952 0.0
SLG119 (SLG119Q) /CSM/SL/SLG1-A/SLG119Q.Seq.d/ 952 0.0
FC-BS17 (FC-BS17Q) /CSM/FC/FC-BS/FC-BS17Q.Seq.d/ 952 0.0
FC-BQ08 (FC-BQ08Q) /CSM/FC/FC-BQ/FC-BQ08Q.Seq.d/ 952 0.0
FC-BO17 (FC-BO17Q) /CSM/FC/FC-BO/FC-BO17Q.Seq.d/ 952 0.0
FC-BL12 (FC-BL12Q) /CSM/FC/FC-BL/FC-BL12Q.Seq.d/ 952 0.0
FC-BA16 (FC-BA16Q) /CSM/FC/FC-BA/FC-BA16Q.Seq.d/ 952 0.0
FC-AZ09 (FC-AZ09Q) /CSM/FC/FC-AZ/FC-AZ09Q.Seq.d/ 952 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 946 0.0 1
CD648590|CD648590.1 AUF_103_D06_T7 Crassostrea virginica Gill Crassostrea virginica cDNA 5' similar to 40S RIBOSOMAL PROTEIN S3A, mRNA sequence. 48 6e-04 2
CD648583|CD648583.1 AUF_103_C23_T7 Crassostrea virginica Gill Crassostrea virginica cDNA 5' similar to 40S RIBOSOMAL PROTEIN S3A, mRNA sequence. 48 6e-04 2
BF707671|BF707671.1 A73_LE Aplysia metacerebral cell cDNA library Aplysia californica cDNA 5', mRNA sequence. 38 0.006 2
AL926728|AL926728.1 Danio rerio EST sequence, clone 176-H07-2. 52 0.007 1
CD646919|CD646919.1 AUF_106_I05_T7 Crassostrea virginica Gonad Crassostrea virginica cDNA 5' similar to ribosomal protein S3a, mRNA sequence. 40 0.088 2
AF220184|AF220184.1 Homo sapiens uncharacterized hypothalamus protein HT010 mRNA, complete cds. 48 0.12 1
BZ386669|BZ386669.1 EINDZ79TR EI_10_12_KB Entamoeba invadens genomic clone EINDZ79, DNA sequence. 34 0.40 2
BQ826264|BQ826264.1 OK-YZ-B822 Bermudagrass cv. Jackpot SSH Library Cynodon dactylon cDNA clone JN-18.M13 similar to Autolysin, mRNA sequence. 38 0.68 2
BI846865|BI846865.1 fp89e01.y4 Zebrafish adult retina cDNA Danio rerio cDNA clone 4789320 5' similar to SW:RS3A_ORYLA O73813 40S RIBOSOMAL PROTEIN S3A ;, mRNA sequence. 40 1.1 2
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54ZW5) RecName: Full=40S ribosomal protein S3a; 278 6e-74
AC116977_69(AC116977|pid:none) Dictyostelium discoideum chromoso... 278 6e-74
EU683898_1(EU683898|pid:none) Chironomus riparius ribosomal prot... 135 8e-31
(P49395) RecName: Full=40S ribosomal protein S3a; AltName: Full=... 132 5e-30
AY603568_1(AY603568|pid:none) Culicoides sonorensis clone CsRPS3... 130 2e-29
EF675773_1(EF675773|pid:none) Artemia franciscana 40S ribosomal ... 130 2e-29
AY857460_1(AY857460|pid:none) Suberites domuncula S3a mRNA, comp... 130 3e-29
EU139170_1(EU139170|pid:none) Flustra foliacea putative 40S ribo... 128 1e-28
(P49397) RecName: Full=40S ribosomal protein S3a; AltName: Full=... 127 2e-28
AY850276_1(AY850276|pid:none) Periplaneta americana Parcxpwex01 ... 126 4e-28
protein update 2009. 4.13
PSORT

psg: 0.83 gvh: 0.42 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.02
nuc: 0.13 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for FC-AS08 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AS08Z
3' end seq.
>FC-AS08Z.Seq
----------AACTCCGTTCATTAATCCACAAATGGTCCACCTTGATCGAATGTTTTGTT
GATGTTAAGACCACTGATGGTTATTTCCTCCGTGTCTTTGCCATCTGTTTCACCAAAAAG
GGTGAATCCCAAAAGAAAAAGACCTCATACGCCAAGACCTCCCGTGTTAAGGCTATCCGT
AAGAAGATGGTTGACATTTTAACCGAAACCGTTTCATCCAACGACCTCAAAACCGTTGTT
GACTATTTAATTGGTGTCTCATTAAACGGTGTTACCACTAACGCCTTTGGTTTTGCCCCA
ACCCTCGCTGAAAAAATCAGAATCGAAGGTTCATCAATCTTCCCAATCCACAACGTTTTC
ATCAGAAAGGTTAAAGTCCTCAAGACTCCAAAAGTTGATGCTGCTAAATTATTTGAACTC
TATGCTTCATTTGCCACCTCAACCATCGCCCCAACTGAAGAAGTAGGTACCGCTGTTGAA
AGAACTGAAGAAACCACCACCACCGCTTAAAAAAAAATAAAATAATTCCTTATTTTTAAA
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 572
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -