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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AS07
Library FC
(Link to library)
Clone ID FC-AS07
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14940-1
Original site URL
Representative seq. ID FC-AS07E
(Link to Original site)
Representative DNA sequence 
>FC-AS07 (FC-AS07Q) /CSM/FC/FC-AS/FC-AS07Q.Seq.d/
CCAAAATATAAAAAATGGGTCGTCGTCCAGCTAGATGCTACAGATATTGCAAAAACAAAC
CATACATCAAATCTAGATATTGTCGTGGTGTACCAGATGCTAAAATCAGAATTTTCGATT
TAGGTCGTAAGAAAGCATCAACTGATGAATTCCCATTATGTGTTCATCTCATCTCCCTCG
AAAAAGAACAACTTTCATCAGAAGCCATTGAAGCTGGTCGTATTTCATGTAACAAATACA
TCTCAAAGACTGGTGGTAAAGATTCATTCCACATGAGAGTCAGAGTTCACCCATGGCACG
TATTACGTATTAACAAGATGCTTTCATGCGCTGGTGCAGATAGACTTCAAACCGGTATGA
GAGGTGCCTTCGGTAAACCAATGGGTACTGTTGCTCGTGTTAATATTGGTCAAATCATTT
TCTCCATCAGAACCAGAGATAATATGTTAGCCAACGTTGTTGAAGCTTTACGTAGATCTT
CATACAAATTCCCAGGTCGTCAAAAGATCGTTGTCTCAAAGAAATGGGGTTTCACCGCCT
ACAATCGTGAAGCTTACCAAAAATTAAAAGCTGACGGTCGTTTAATGAACGATGGTGCCA
ACGTTAAAGTCATCACCAACCACGGTACTCTTGCTCAATACGCCAAAGATATCGCTGCTG
CCAACTAAATAAATTTTTTATTTAACTCTATTTTTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
sequence update 1997. 4.26
Translated Amino Acid sequence 
ki*KMGRRPARCYRYCKNKPYIKSRYCRGVPDAKIRIFDLGRKKASTDEFPLCVHLISLE
KEQLSSEAIEAGRISCNKYISKTGGKDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMR
GAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAY
NREAYQKLKADGRLMNDGANVKVITNHGTLAQYAKDIAAAN*inflfnsiflkkkkkkkk
kk
Translated Amino Acid sequence (All Frames) 
Frame A:
pkykkwvvvqldatdiaktnhtsnldivvvyqmlksefsi*vvrkhqlmnshyvfissps
kknnfhqkplklvvfhvtntsqrlvvkihst*esefthgtyyvltrcfhalvqidfkpv*
evpsvnqwvlllvlilvksfspsepeiic*ptllklyvdlhtnsqvvkrslsqrngvspp
tivkltkn*kltvv**tmvptlksspttvlllntpkisllptk*ifyltlff*kkkkkkk
kkk


Frame B:
qnikngssss*mlqilqkqtihqi*ilswctrc*nqnfrfrs*esin**ipimcsshlpr
krttfirsh*swsyfm*qihlkdww*rfiphesqsspmarity*qdafmrwcr*tsnrye
rclr*tngyccsc*ywsnhflhqnqr*yvsqrc*sft*ifiqiprsskdrclkemgfhrl
qs*slpkiks*rsfnerwcqr*shhqpryscsirqryrccqlnkffi*lyffkkkkkkkk
kkk


Frame C:
ki*KMGRRPARCYRYCKNKPYIKSRYCRGVPDAKIRIFDLGRKKASTDEFPLCVHLISLE
KEQLSSEAIEAGRISCNKYISKTGGKDSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMR
GAFGKPMGTVARVNIGQIIFSIRTRDNMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAY
NREAYQKLKADGRLMNDGANVKVITNHGTLAQYAKDIAAAN*inflfnsiflkkkkkkkk
kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS07 (FC-AS07Q) /CSM/FC/FC-AS/FC-AS07Q.Seq.d/                     1368   0.0
FC-303 (FC-303Q) /CSM/CG/CG-FC/FC-303Q.Seq.d/                        1368   0.0
SSH847 (SSH847Q) /CSM/SS/SSH8-B/SSH847Q.Seq.d/                       1324   0.0
FC-BI12 (FC-BI12Q) /CSM/FC/FC-BI/FC-BI12Q.Seq.d/                     1310   0.0
FC-AV10 (FC-AV10Q) /CSM/FC/FC-AV/FC-AV10Q.Seq.d/                     1279   0.0
VSJ723 (VSJ723Q) /CSM/VS/VSJ7-A/VSJ723Q.Seq.d/                       1233   0.0
AFB142 (AFB142Q) /CSM/AF/AFB1-B/AFB142Q.Seq.d/                       1170   0.0
VSF869 (VSF869Q) /CSM/VS/VSF8-C/VSF869Q.Seq.d/                       1005   0.0
SLB744 (SLB744Q) /CSM/SL/SLB7-B/SLB744Q.Seq.d/                        896   0.0
VSE722 (VSE722Q) /CSM/VS/VSE7-A/VSE722Q.Seq.d/                        862   0.0
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AA547804|AA547804.1 MB3D6V1B03T3 Brugia malayi day 6 post-infection third stage larvae SAW96MLW-BmL3d6 Brugia malayi cDNA clone 3D6V1B03 5', mRNA sequence.    98   1e-36  3
BP187489|BP187489.1 Dugesia japonica cDNA, clone: 00361_HN, expressed in the head.    76   6e-36  6
BP189345|BP189345.1 Dugesia japonica cDNA, clone: 06358_HH, expressed in the head.    74   5e-33  6
BG226139|BG226139.1 kq09g06.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F10B5.1 CE01543 60S RIBOSOMAL PROTEIN L10 ;, mRNA sequence.    46   4e-27  7
BE587544|BE587544.1 WHE0660_A12_A24ZM Secale cereale root tip cDNA library Secale cereale cDNA clone WHE0660_A12_A24, mRNA sequence.   111   5e-27  3
BQ621908|BQ621908.1 fch1c.pk002.j9 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence.    66   5e-27  4
BG226993|BG226993.1 kp95b10.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F10B5.1 CE01543 60S RIBOSOMAL PROTEIN L10 ;, mRNA sequence.    46   4e-25  7
BE580269|BE580269.1 kq39c02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F10B5.1 CE01543 60S RIBOSOMAL PROTEIN L10 ;, mRNA sequence.    46   7e-25  7
BP186633|BP186633.1 Dugesia japonica cDNA, clone: 01317_HH, expressed in the head.    66   7e-23  5
BF015078|BF015078.1 kq64a06.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:RL10_CAEEL Q09533 60S RIBOSOMAL PROTEIN L10 ;, mRNA sequence.    46   2e-22  6
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB902303_1(FB902303|pid:none) Sequence 121576 from Patent WO2008...   327   2e-88
EU302535_1(EU302535|pid:none) Lineus viridis ribosomal protein r...   325   7e-88
BT076001_1(BT076001|pid:none) Caligus rogercresseyi clone crog-e...   325   7e-88
EF490854_1(EF490854|pid:none) Lepeophtheirus salmonis clone LS00...   323   3e-87
DQ440008_1(DQ440008|pid:none) Aedes aegypti clone AE-200A riboso...   323   3e-87
EU195426_1(EU195426|pid:none) Mucor racemosus strain PTCC 5305 p...   323   4e-87
BT080413_1(BT080413|pid:none) Caligus clemensi clone ccle-evs-51...   322   6e-87
EU045346_1(EU045346|pid:none) Phlebotomus papatasi 60S ribosomal...   322   7e-87
AK339790_1(AK339790|pid:none) Acyrthosiphon pisum ACYPI007451 mR...   322   7e-87
EU558359_1(EU558359|pid:none) Phoronis muelleri putative 60S rib...   320   4e-86
protein update 2009. 7. 2
PSORT 

 psg: 0.56  gvh: 0.29  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.59  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for FC-AS07 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AS07E
Full length Seq. 
>FC-AS07E.Seq
CCAAAATATAAAAAATGGGTCGTCGTCCAGCTAGATGCTACAGATATTGCAAAAACAAAC
CATACATCAAATCTAGATATTGTCGTGGTGTACCAGATGCTAAAATCAGAATTTTCGATT
TAGGTCGTAAGAAAGCATCAACTGATGAATTCCCATTATGTGTTCATCTCATCTCCCTCG
AAAAAGAACAACTTTCATCAGAAGCCATTGAAGCTGGTCGTATTTCATGTAACAAATACA
TCTCAAAGACTGGTGGTAAAGATTCATTCCACATGAGAGTCAGAGTTCACCCATGGCACG
TATTACGTATTAACAAGATGCTTTCATGCGCTGGTGCAGATAGACTTCAAACCGGTATGA
GAGGTGCCTTCGGTAAACCAATGGGTACTGTTGCTCGTGTTAATATTGGTCAAATCATTT
TCTCCATCAGAACCAGAGATAATATGTTAGCCAACGTTGTTGAAGCTTTACGTAGATCTT
CATACAAATTCCCAGGTCGTCAAAAGATCGTTGTCTCAAAGAAATGGGGTTTCACCGCCT
ACAATCGTGAAGCTTACCAAAAATTAAAAGCTGACGGTCGTTTAATGAACGATGGTGCCA
ACGTTAAAGTCATCACCAACCACGGTACTCTTGCTCAATACGCCAAAGATATCGCTGCTG
CCAACTAAATAAATTTTTTATTTAACTCTATTTTTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
Length of full length seq. 730