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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AS06
Library FC
(Link to library)
Clone ID FC-AS06
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15075-1
Original site URL
Representative seq. ID FC-AS06Z
(Link to Original site)
Representative DNA sequence 
>FC-AS06 (FC-AS06Q) /CSM/FC/FC-AS/FC-AS06Q.Seq.d/
XXXXXXXXXXGTTCCACACCATATCTACTGTTTGGGTCTTTTAGCAACCGGTTCAACAAC
ATGTAGTGTCTCTGCATCTGCTACCTATTGGGCAAATTATTTAAATTCAAATGGTTTCAT
TCATAATGGTAAAACTGTTTCACAAGTTGCTACTTCCTTAACAAATGCAATTAATCAAGA
TAATTATTATGATACAATTGCTGATATGGAAGCTGCTTTTCCAAATTTATCAACAATCTT
TTCAACTCCACCGGTATAATTAAAAATTATCATTATTTAAAAAAAAAAAAAAAAAATATT
AACTTTTTTTTTCAAAAATCAACTTATTTATTAATAAAAACCAAATTCTGGTTTTATTTT
TTAAAAAAAAAAAAAAA
sequence update 1997. 4.15
Translated Amino Acid sequence 
---PHHIYCLGLLATGSTTCSVSASATYWANYLNSNGFIHNGKTVSQVATSLTNAINQDN
YYDTIADMEAAFPNLSTIFSTPPV*lkiiii*kkkkkiltfffknqliy**kpnsgfif*
kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---fhtistvwvf*qpvqqhvvslhllpigqii*iqmvsfimvklfhklllp*qmqliki
iimiqlliwkllfqiyqqsfqlhryn*klslfkkkkkky*lffskinlfinknqilvlff
kkkkk


Frame B:
---stpyllfgsfsnrfnnm*clcicyllgklfkfkwfhs*w*ncftscyflnkcn*sr*
ll*ync*ygscfskfinnlfnstgiiknyhylkkkkkninfffqkstylliktkfwfyfl
kkkk


Frame C:
---PHHIYCLGLLATGSTTCSVSASATYWANYLNSNGFIHNGKTVSQVATSLTNAINQDN
YYDTIADMEAAFPNLSTIFSTPPV*lkiiii*kkkkkiltfffknqliy**kpnsgfif*
kkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS06 (FC-AS06Q) /CSM/FC/FC-AS/FC-AS06Q.Seq.d/                      531   e-150
VSG816 (VSG816Q) /CSM/VS/VSG8-A/VSG816Q.Seq.d/                        523   e-148
VSE604 (VSE604Q) /CSM/VS/VSE6-A/VSE604Q.Seq.d/                        523   e-148
VSE484 (VSE484Q) /CSM/VS/VSE4-D/VSE484Q.Seq.d/                        523   e-148
VSB388 (VSB388Q) /CSM/VS/VSB3-D/VSB388Q.Seq.d/                        523   e-148
VSB389 (VSB389Q) /CSM/VS/VSB3-D/VSB389Q.Seq.d/                        515   e-145
CHD754 (CHD754Q) /CSM/CH/CHD7-C/CHD754Q.Seq.d/                        513   e-145
VFG147 (VFG147Q) /CSM/VF/VFG1-B/VFG147Q.Seq.d/                        511   e-144
VFE144 (VFE144Q) /CSM/VF/VFE1-B/VFE144Q.Seq.d/                        502   e-141
VFD844 (VFD844Q) /CSM/VF/VFD8-B/VFD844Q.Seq.d/                        498   e-140
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U67939|U67939.1 Dictyostelium discoideum ORFveg111 mRNA, partial cds.   523  e-145  1
AL440399|AL440399.1 T7 end of clone BD0AA012B11 of library BD0AA from strain CBS 94 of  Candida tropicalis.    40  0.20  2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    36  0.30  10
AC079610|AC079610.4 Homo sapiens clone RP11-105N14, complete sequence.    42  0.36  7
AA678169|AA678169.1 zi26f08.s1 Soares_fetal_liver_spleen_1NFLS_S1 Homo sapiens cDNA clone IMAGE:431943 3', mRNA sequence.    34  0.57  2
AA358489|AA358489.1 EST67368 Fetal lung III Homo sapiens cDNA 5' end, mRNA sequence.    34  0.62  2
BF115679|BF115679.1 7n82e04.x1 NCI_CGAP_Ov18 Homo sapiens cDNA clone IMAGE:3571278 3', mRNA sequence.    34  0.68  2
CB049049|CB049049.1 NISC_gj08d05.x1 NCI_CGAP_Pr28 Homo sapiens cDNA clone IMAGE:3270969 3', mRNA sequence.    34  0.93  2
W67120|W67120.1 zd39c12.s1 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone IMAGE:343030 3', mRNA sequence.    34  0.98  2
BF448950|BF448950.1 nae35f12.x1 Lupski_sympathetic_trunk Homo sapiens cDNA clone IMAGE:4090918 3', mRNA sequence.    34  1.0  2
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM910991_444(AM910991|pid:none) Plasmodium knowlesi strain H chr...    33   2.2
protein update 2008.11.10
PSORT 

 psg: 0.91  gvh: 0.63  alm: 0.42  top: 0.50  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: extracellular, including cell wall
	 28.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for FC-AS06 is exc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AS06Z
3' end seq. 
>FC-AS06Z.Seq
----------GTTCCACACCATATCTACTGTTTGGGTCTTTTAGCAACCGGTTCAACAAC
ATGTAGTGTCTCTGCATCTGCTACCTATTGGGCAAATTATTTAAATTCAAATGGTTTCAT
TCATAATGGTAAAACTGTTTCACAAGTTGCTACTTCCTTAACAAATGCAATTAATCAAGA
TAATTATTATGATACAATTGCTGATATGGAAGCTGCTTTTCCAAATTTATCAACAATCTT
TTCAACTCCACCGGTATAATTAAAAATTATCATTATTTAAAAAAAAAAAAAAAAAATATT
AACTTTTTTTTTCAAAAATCAACTTATTTATTAATAAAAACCAAATTCTGGTTTTATTTT
TTAAAAAAAAAAAAAAA
Length of 3' end seq. 367
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -