>FC-AS05 (FC-AS05Q) /CSM/FC/FC-AS/FC-AS05Q.Seq.d/
AAAAAAAAAAAAAAAAATAAATAAGTAATTATAGGATGTTATCAAGAGCAACTAGATTAT
TATCTACAAAAAATGTTGTTGTAAACTCAATTGTAAAACACACTACCATTCGTTCATTTG
CAAGTCATGGTGGTGGTGAAGCAGGTGGTGCTTATCCAACTGAACCTGAAGCAGGTACAC
AAATGATTACAAGAAGAGTAGAATTTGGTGACGCAGTCTATTCATACAAACACGGAAATT
TTATTGTTGATCCAATTCAAATTAGAGAATTAGCAGAAGAACAACAACAACAACAACATC
ATGTTCATGGTCCAGGTTGTTCACATGGCCATCATCACGATAGTCACGCAAACGATGGTC
ACCATGATGAACACCATGATGAACACCACGATCATGTTAATCCAGATGATGTTGAAGATG
AATTCCCAAGAGGTTACTTTTTAAATACACCACCATCAGTACCATACCCAATGAATCCAT
ACTATTTAACAGCTCTTTGTTTACTTCCAATCATTGGTTCATTATTTTCAATACGTTATT
TTGATAATAAATCAGAAAACGATTATGAATTATTTAGAAGCGAATACTTGGAAGCAAATC
CAGCACTCAAACAAAAATATTACGATATCACCCACAAATATCCATTATCTCATTAAATTC
GATAAATAATTTTTTAAAAAATAATACATATAAAAAGAATAATAATACAGTTAAAGTAAT
ACAGAAATTGTAGAAAATATTCAAAACTCAAAAATTTAAAAAAAAAAAAAAAAATA

kkkkk*ISNYRMLSRATRLLSTKNVVVNSIVKHTTIRSFASHGGGEAGGAYPTEPEAGTQ
MITRRVEFGDAVYSYKHGNFIVDPIQIRELAEEQQQQQHHVHGPGCSHGHHHDSHANDGH
HDEHHDEHHDHVNPDDVEDEFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIGSLFSIRYF
DNKSENDYELFRSEYLEANPALKQKYYDITHKYPLSH*ir*iif*kiihikriiiqlk*y
rncrkysklknlkkkkki

Frame A:
kkkkknk*viigcyqeqldyylqkmll*tql*ntlpfvhlqvmvvvkqvvliqlnlkqvh
k*lqee*nlvtqsihtnteillliqfklen*qknnnnnnimfmvqvvhmaiitivtqtmv
tmmntmmnttimliqmmlkmnsqevtf*ihhhqyhtq*ihti*qlfvyfqslvhyfqyvi
liinqktimnyleantwkqiqhsnknitisptnihylikfdk*ffkk*yi*ke**ys*sn
teiveniqnski*kkkkk


Frame B:
kkkkkink*l*dviksn*iiiykkcccklnckthyhsfickswww*srwclsn*t*sryt
ndykksriw*rslfiqtrkfyc*snsn*risrrttttttscswsrlftwpssr*srkrws
p**tp**tprsc*sr*c*r*ipkrllfkyttistipnesilfnsslftsnhwfiifntlf
***irkrl*ii*krilgsksstqtkilryhpqisiislnsinnflknntykknnntvkvi
qkl*kifktqkfkkkkkn


Frame C:
kkkkk*ISNYRMLSRATRLLSTKNVVVNSIVKHTTIRSFASHGGGEAGGAYPTEPEAGTQ
MITRRVEFGDAVYSYKHGNFIVDPIQIRELAEEQQQQQHHVHGPGCSHGHHHDSHANDGH
HDEHHDEHHDHVNPDDVEDEFPRGYFLNTPPSVPYPMNPYYLTALCLLPIIGSLFSIRYF
DNKSENDYELFRSEYLEANPALKQKYYDITHKYPLSH*ir*iif*kiihikriiiqlk*y
rncrkysklknlkkkkki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK578 (SSK578Q) /CSM/SS/SSK5-D/SSK578Q.Seq.d/                        700   0.0
SSF511 (SSF511Q) /CSM/SS/SSF5-A/SSF511Q.Seq.d/                        700   0.0
FC-AS05 (FC-AS05Q) /CSM/FC/FC-AS/FC-AS05Q.Seq.d/                      700   0.0
FC-301 (FC-301Q) /CSM/CG/CG-FC/FC-301Q.Seq.d/                         700   0.0
FC-AV08 (FC-AV08Q) /CSM/FC/FC-AV/FC-AV08Q.Seq.d/                      470   e-131
SLC336 (SLC336Q) /CSM/SL/SLC3-B/SLC336Q.Seq.d/                         40   0.049
SHG322 (SHG322Q) /CSM/SH/SHG3-A/SHG322Q.Seq.d/                         40   0.049
CHR274 (CHR274Q) /CSM/CH/CHR2-D/CHR274Q.Seq.d/                         40   0.049
CHJ854 (CHJ854Q) /CSM/CH/CHJ8-C/CHJ854Q.Seq.d/                         40   0.049
CHC276 (CHC276Q) /CSM/CH/CHC2-D/CHC276Q.Seq.d/                         40   0.049

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BH426721|BH426721.1 BOHLQ22TF BOHL Brassica oleracea genomic clone BOHLQ22, genomic survey sequence.    38   0.007  2
Z68003|Z68003.1 Caenorhabditis elegans cosmid E02H4.               44   0.11   4
AC023852|AC023852.3 Homo sapiens chromosome 8 clone RP11-106J22 map 8, LOW-PASS SEQUENCE SAMPLING.    38   0.15   5
AC113857|AC113857.5 Rattus norvegicus clone CH230-258I11, WORKING DRAFT SEQUENCE, 1 ordered piece.    48   0.18   1
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   0.46   9
BI743351|BI743351.1 kx41h10.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5', mRNA sequence.    36   0.51   2
BX005047|BX005047.5 Zebrafish DNA sequence from clone DKEY-38N1 in linkage group 1.    46   0.71   1
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  42   0.87   9
AW818473|AW818473.1 RC1-ST0278-020300-015-h02 ST0278 Homo sapiens cDNA, mRNA sequence.    42   0.90   2
AC133395|AC133395.2 Sus scrofa clone RP44-202G4, WORKING DRAFT SEQUENCE, 2 ordered pieces.    38   1.0    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QN4) RecName: Full=Uncharacterized transmembrane protein DDB...   305   8e-82
AY338732_1(AY338732|pid:none) Avian infectious bronchitis virus ...    34   4.6
EU637854_1(EU637854|pid:none) Infectious bronchitis virus strain...    34   6.0
CP001055_1360(CP001055|pid:none) Elusimicrobium minutum Pei191, ...    33   7.8

 psg: 0.64  gvh: 0.34  alm: 0.29  top: 0.73  tms: 0.07  mit: 0.50  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for FC-AS05 is cyt

>FC-AS05E.Seq
AAAAAAAAAAAAAAAAATAAATAAGTAATTATAGGATGTTATCAAGAGCAACTAGATTAT
TATCTACAAAAAATGTTGTTGTAAACTCAATTGTAAAACACACTACCATTCGTTCATTTG
CAAGTCATGGTGGTGGTGAAGCAGGTGGTGCTTATCCAACTGAACCTGAAGCAGGTACAC
AAATGATTACAAGAAGAGTAGAATTTGGTGACGCAGTCTATTCATACAAACACGGAAATT
TTATTGTTGATCCAATTCAAATTAGAGAATTAGCAGAAGAACAACAACAACAACAACATC
ATGTTCATGGTCCAGGTTGTTCACATGGCCATCATCACGATAGTCACGCAAACGATGGTC
ACCATGATGAACACCATGATGAACACCACGATCATGTTAATCCAGATGATGTTGAAGATG
AATTCCCAAGAGGTTACTTTTTAAATACACCACCATCAGTACCATACCCAATGAATCCAT
ACTATTTAACAGCTCTTTGTTTACTTCCAATCATTGGTTCATTATTTTCAATACGTTATT
TTGATAATAAATCAGAAAACGATTATGAATTATTTAGAAGCGAATACTTGGAAGCAAATC
CAGCACTCAAACAAAAATATTACGATATCACCCACAAATATCCATTATCTCATTAAATTC
GATAAATAATTTTTTAAAAAATAATACATATAAAAAGAATAATAATACAGTTAAAGTAAT
ACAGAAATTGTAGAAAATATTCAAAACTCAAAAATTTAAAAAAAAAAAAAAAAATA