>FC-AS01 (FC-AS01Q) /CSM/FC/FC-AS/FC-AS01Q.Seq.d/
XXXXXXXXXXCATTAGATAATGTTACCTGGTCTGAATATCGTAATGGTGCTGCTATTACT
GGTGTAACTGATCGTAACACTGTTGTTAATCATTTCTTTGATACTCCAATTAGAGCTCGT
TCAATTGCTATCCACCCATTAACCTGGAATAACCACATTTCATTAAGATGTGAATTCTAC
ACTCAACCAGTACAAAGCTCAGTCACTCAAGTTGGTGCAGATATTTACACTGGCGATAAC
TGTGCCTTAAATACCGGTTCAGGTAAACGTGAAGTTGTTGTCCCAGTTAAATTCCAATTT
GAATTTGCTACTCTCCCAAAGGTTGCCCTCAACTTTGATCAAATCGATTGTACTGATGCT
ACCAATCAAACTCGTATTGGTGTTCAACCAAGAAACATTACCACCAAAGGTTTCGATTGT
GTTTTCTACACTTGGAATGCTAACAAAGTCTATTCATTAAGAGCTGATTACATTGCTACT
GCTTTAGAATAAATTTTTAATCTTATTATTAAAATTGTAATTTAATTTTTAATCAAATTT
AATAAAAAAAAAAAAAAAAAAAATCCAAATTCAAGATTTTGTTTATTATACAA

---LDNVTWSEYRNGAAITGVTDRNTVVNHFFDTPIRARSIAIHPLTWNNHISLRCEFYT
QPVQSSVTQVGADIYTGDNCALNTGSGKREVVVPVKFQFEFATLPKVALNFDQIDCTDAT
NQTRIGVQPRNITTKGFDCVFYTWNANKVYSLRADYIATALE*ifnliikivi*flikfn
kkkkkknpnsrfclly

Frame A:
---ir*cylv*is*wccyywcn*s*hcc*sfl*ysn*ssfncyppinle*phfikm*ilh
ststklshsswcrylhwr*lclkyrfr*t*sccps*ipi*icyspkgcpql*snrly*cy
qsnsywcstkkhyhqrfrlcflhlec*qslfiks*lhcycfrinf*syy*ncnlifnqi*
*kkkkkkskfkilfiiq


Frame B:
---LDNVTWSEYRNGAAITGVTDRNTVVNHFFDTPIRARSIAIHPLTWNNHISLRCEFYT
QPVQSSVTQVGADIYTGDNCALNTGSGKREVVVPVKFQFEFATLPKVALNFDQIDCTDAT
NQTRIGVQPRNITTKGFDCVFYTWNANKVYSLRADYIATALE*ifnliikivi*flikfn
kkkkkknpnsrfclly


Frame C:
---*imlpglnivmvllllv*livtllliislilqlelvqllsth*pgittfh*dvnstl
nqykaqslklvqiftlaitvp*ipvqvnvkllsqlnsnlnlllsqrlpstliksivlmlp
iklvlvfnqetlppkvsivfstlgmltksih*elitllll*nkflilllkl*fnf*snli
kkkkkkiqiqdfvyyt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF358 (VSF358Q) /CSM/VS/VSF3-C/VSF358Q.Seq.d/                        932   0.0
VHP309 (VHP309Q) /CSM/VH/VHP3-A/VHP309Q.Seq.d/                        932   0.0
VHG652 (VHG652Q) /CSM/VH/VHG6-C/VHG652Q.Seq.d/                        932   0.0
FC-AS01 (FC-AS01Q) /CSM/FC/FC-AS/FC-AS01Q.Seq.d/                      932   0.0
VHB594 (VHB594Q) /CSM/VH/VHB5-D/VHB594Q.Seq.d/                        924   0.0
FC-BF07 (FC-BF07Q) /CSM/FC/FC-BF/FC-BF07Q.Seq.d/                      916   0.0
FC-BH10 (FC-BH10Q) /CSM/FC/FC-BH/FC-BH10Q.Seq.d/                      900   0.0
VFI141 (VFI141Q) /CSM/VF/VFI1-B/VFI141Q.Seq.d/                        783   0.0
VHM433 (VHM433Q) /CSM/VH/VHM4-B/VHM433Q.Seq.d/                        779   0.0
VFB223 (VFB223Q) /CSM/VF/VFB2-A/VFB223Q.Seq.d/                        743   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

J01284|J01284.1 Slime mold (D.discoideum) discoidin-Ic gene, complete cds.  1057  0.0  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1057  0.0  6
J01282|J01282.1 Slime mold (D.discoideum) discoidin-ia gene.     795  0.0  1
J01281|J01281.1 Slime mold (D.discoideum) discoidin-i(5.6) gene, 3' end; (3' part of discoidin-ib or discoidin-id, not known which).   569  e-169  2
J01283|J01283.1 Slime mold (D.discoideum) discoidin-Ib gene, partial cds.   331  6e-87  1
J01285|J01285.1 Slime mold (D.discoideum) discoidin-Id gene, 5' end.   331  6e-87  1
X00327|X00327.1 Dictyostelim discoideum discoidin I pseudogene fragment with 139 bp of discoidin I homology.   194  8e-46  1
X00326|X00326.1 Dictyostelium dicoideum discoidin I beta gene upstream region.   119  4e-32  2
AP000903|AP000903.6 Homo sapiens genomic DNA, chromosome 11q clone:RP11-700I2.    48  0.12  1
AL590712|AL590712.4 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP11-84F24.    48  0.12  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P02887) RecName: Full=Discoidin-1 subunit B/C; AltName: Full=Di...   331   8e-90
J01282_1(J01282|pid:none) Slime mold (D.discoideum) discoidin-ia...   317   1e-85
J01281_1(J01281|pid:none) Slime mold (D.discoideum) discoidin-i(...   211   1e-53
AB120175_1(AB120175|pid:none) Dictyostelium discoideum DD7-1 mRN...   173   3e-42
(P42530) RecName: Full=Discoidin-2; AltName: Full=Discoidin II; ...   139   4e-32
DLDOID(A03383) discoidin I chain D - slime mold (Dictyostelium d...   120   3e-26
AC116979_21(AC116979|pid:none) Dictyostelium discoideum chromoso...    60   6e-08
EU304328_129(EU304328|pid:none) Ostreococcus virus OsV5, complet...    57   4e-07
(P05450) RecName: Full=ATP synthase subunits region ORF 7;  &S04...    51   3e-05
CP000264_1051(CP000264|pid:none) Jannaschia sp. CCS1, complete g...    50   3e-05

 psg: 0.75  gvh: 0.43  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  8.0 %: mitochondrial

>> prediction for FC-AS01 is nuc

>FC-AS01Z.Seq
----------CATTAGATAATGTTACCTGGTCTGAATATCGTAATGGTGCTGCTATTACT
GGTGTAACTGATCGTAACACTGTTGTTAATCATTTCTTTGATACTCCAATTAGAGCTCGT
TCAATTGCTATCCACCCATTAACCTGGAATAACCACATTTCATTAAGATGTGAATTCTAC
ACTCAACCAGTACAAAGCTCAGTCACTCAAGTTGGTGCAGATATTTACACTGGCGATAAC
TGTGCCTTAAATACCGGTTCAGGTAAACGTGAAGTTGTTGTCCCAGTTAAATTCCAATTT
GAATTTGCTACTCTCCCAAAGGTTGCCCTCAACTTTGATCAAATCGATTGTACTGATGCT
ACCAATCAAACTCGTATTGGTGTTCAACCAAGAAACATTACCACCAAAGGTTTCGATTGT
GTTTTCTACACTTGGAATGCTAACAAAGTCTATTCATTAAGAGCTGATTACATTGCTACT
GCTTTAGAATAAATTTTTAATCTTATTATTAAAATTGTAATTTAATTTTTAATCAAATTT
AATAAAAAAAAAAAAAAAAAAAATCCAAATTCAAGATTTTGTTTATTATACAA