NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AR24
Library FC
(Link to library)
Clone ID FC-AR24
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16141-1
Original site URL
Representative seq. ID FC-AR24E
(Link to Original site)
Representative DNA sequence 
>FC-AR24 (FC-AR24Q) /CSM/FC/FC-AR/FC-AR24Q.Seq.d/
GTACAATTCCACAAGGTATAAAGATTAGAGAAAGGTATGATCTTAAAGGTTCAAAAGTTA
ACAGAGGTGGCAATGATCCTTTGTTCAAAGGTGATGGATTAGGTTTAGATTTAGATTTTG
TAAACTTTAGAAAATTTTTAAATTTACCAGATGGTTTTAGTCATTCAATCATTCAACAAT
TAAAAAATGATTCTGCTTTCTTAACCTCTTTAAATATTATGGATTATTCTTTACTAATTG
GTGTAATTCCAAATAATGATGATTTTAAAAAGAAATTAATTGAATCTGGTGGTAATATTA
ATAATATTTTAAGTGGTTCAAATTTAAATAATAATAATAGTAATAGTAATAGTAATGGTA
TTGGTAGTGGTAGTAGTGGTAGTAATTTTAATAATAATAATAATGGACATGGTAGTGGTG
GTTTATTAAAAGGTAGTTTTACAAATTCATCATTAATTTCAAATTCATTCGATTTTTCAA
ATGGTATTATATCAGCAGATGAAAAAGAAATCTATTATATTGGTGTTATTGATATACTTC
AACTTTATGATTTTAGTAAGAAATTGGAAAGATTTTTAAAGGTTTATTTATTTAGAAAGG
ATGGTGATGGTATCTCTGCAACTAGACCTGAACCTTATAAACAAAGATTCTTAAAAAGAA
TGAATGAAATCATTAAAAATAAAAACTATAAACATAAATCTGCTACTCAACAATATAATA
ATTCAATTATAAATAGTAATAATAATTATTATCATAATGAAGAAGAAGTTTTATTTGATA
CATAA
sequence update 1997. 4.15
Translated Amino Acid sequence 
TIPQGIKIRERYDLKGSKVNRGGNDPLFKGDGLGLDLDFVNFRKFLNLPDGFSHSIIQQL
KNDSAFLTSLNIMDYSLLIGVIPNNDDFKKKLIESGGNINNILSGSNLNNNNSNSNSNGI
GSGSSGSNFNNNNNGHGSGGLLKGSFTNSSLISNSFDFSNGIISADEKEIYYIGVIDILQ
LYDFSKKLERFLKVYLFRKDGDGISATRPEPYKQRFLKRMNEIIKNKNYKHKSATQQYNN
SIINSNNNYYHNEEEVLFDT*
Translated Amino Acid sequence (All Frames) 
Frame A:
vqfhkv*rlekgmilkvqkltevamilcskvmd*v*i*il*tlenf*iyqmvlviqsfnn
*kmills*pl*ilwiily*lv*fqimmilkrn*lnlvviliif*vvqi*iiiivivivmv
lvvvvvvviliiiimdmvvvvy*kvvlqihh*fqihsifqmvlyqqmkkksiilvlliyf
nfmilvrnwkdf*rfiylermvmvslqldlnlinkds*ke*mkslkiktininlllnnii
iql*iviiiiiimkkkfylih


Frame B:
ynstrykd*rkv*s*rfks*qrwq*sfvqr*wirfrfrfckl*kifkftrwf*sfnhsti
kk*fcflnlfkyyglfftnwcnsk***f*kein*iww*y**yfkwfkfk*********wy
w*w**w**f*****wtw*wwfikr*fykfiinfkfirffkwyyisr*krnllywcy*yts
tl*f**eigkifkglfi*kgw*wylcn*t*tl*tkilkkne*nh*k*kl*t*icysti**
fnyk****lls**rrsfi*yi


Frame C:
TIPQGIKIRERYDLKGSKVNRGGNDPLFKGDGLGLDLDFVNFRKFLNLPDGFSHSIIQQL
KNDSAFLTSLNIMDYSLLIGVIPNNDDFKKKLIESGGNINNILSGSNLNNNNSNSNSNGI
GSGSSGSNFNNNNNGHGSGGLLKGSFTNSSLISNSFDFSNGIISADEKEIYYIGVIDILQ
LYDFSKKLERFLKVYLFRKDGDGISATRPEPYKQRFLKRMNEIIKNKNYKHKSATQQYNN
SIINSNNNYYHNEEEVLFDT*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AR24 (FC-AR24Q) /CSM/FC/FC-AR/FC-AR24Q.Seq.d/                      575   e-163
SSL457 (SSL457Q) /CSM/SS/SSL4-C/SSL457Q.Seq.d/                        527   e-149
SFA226 (SFA226Q) /CSM/SF/SFA2-B/SFA226Q.Seq.d/                         50   5e-05
CHI439 (CHI439Q) /CSM/CH/CHI4-B/CHI439Q.Seq.d/                         50   5e-05
AFA753 (AFA753Q) /CSM/AF/AFA7-C/AFA753Q.Seq.d/                         44   0.003
VHM688 (VHM688Q) /CSM/VH/VHM6-D/VHM688Q.Seq.d/                         42   0.013
AFC157 (AFC157Q) /CSM/AF/AFC1-C/AFC157Q.Seq.d/                         42   0.013
VSK255 (VSK255Q) /CSM/VS/VSK2-C/VSK255Q.Seq.d/                         40   0.050
VSK104 (VSK104Q) /CSM/VS/VSK1-A/VSK104Q.Seq.d/                         40   0.050
VSJ762 (VSJ762Q) /CSM/VS/VSJ7-C/VSJ762Q.Seq.d/                         40   0.050
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY254474|AY254474.1 Dictyostelium discoideum frizzled protein (frzA) gene, complete cds.   575   0.0    3
AC115682|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence.    42   2e-08  9
AC126934|AC126934.4 Mus musculus chromosome 1 clone RP24-172H9, complete sequence.    38   5e-07  9
AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence.    38   2e-06  7
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    36   3e-06  11
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.    40   4e-06  6
BX537120|BX537120.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    38   6e-06  11
AC012548|AC012548.3 Homo sapiens clone RP11-11K13, WORKING DRAFT SEQUENCE, 12 unordered pieces.    32   1e-05  11
AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    38   2e-05  9
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    34   2e-05  14
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK295587_1(AK295587|pid:none) Homo sapiens cDNA FLJ54445 complet...    58   3e-07
U78581_1(U78581|pid:none) Human type I phosphatidylinositol-4-ph...    58   3e-07
U52387_1(U52387|pid:none) Homo sapiens STM7 (STM7) gene, exon 16...    58   3e-07
BC030587_1(BC030587|pid:none) Homo sapiens phosphatidylinositol-...    57   5e-07
AE013599_3706(AE013599|pid:none) Drosophila melanogaster chromos...    54   4e-06
AY069204_1(AY069204|pid:none) Drosophila melanogaster GH26019 fu...    54   4e-06
AC005542_2(AC005542|pid:none) Homo sapiens chromosome 19, cosmid...    54   7e-06
(O60331) RecName: Full=Phosphatidylinositol-4-phosphate 5-kinase...    54   7e-06
AB011161_1(AB011161|pid:none) Homo sapiens mRNA for KIAA0589 pro...    54   7e-06
AK301309_1(AK301309|pid:none) Homo sapiens cDNA FLJ61177 complet...    54   7e-06
protein update 2009. 7. 2
PSORT 

 psg: 0.54  gvh: 0.39  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for FC-AR24 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AR24E
Full length Seq. 
>FC-AR24E.Seq
GTACAATTCCACAAGGTATAAAGATTAGAGAAAGGTATGATCTTAAAGGTTCAAAAGTTA
ACAGAGGTGGCAATGATCCTTTGTTCAAAGGTGATGGATTAGGTTTAGATTTAGATTTTG
TAAACTTTAGAAAATTTTTAAATTTACCAGATGGTTTTAGTCATTCAATCATTCAACAAT
TAAAAAATGATTCTGCTTTCTTAACCTCTTTAAATATTATGGATTATTCTTTACTAATTG
GTGTAATTCCAAATAATGATGATTTTAAAAAGAAATTAATTGAATCTGGTGGTAATATTA
ATAATATTTTAAGTGGTTCAAATTTAAATAATAATAATAGTAATAGTAATAGTAATGGTA
TTGGTAGTGGTAGTAGTGGTAGTAATTTTAATAATAATAATAATGGACATGGTAGTGGTG
GTTTATTAAAAGGTAGTTTTACAAATTCATCATTAATTTCAAATTCATTCGATTTTTCAA
ATGGTATTATATCAGCAGATGAAAAAGAAATCTATTATATTGGTGTTATTGATATACTTC
AACTTTATGATTTTAGTAAGAAATTGGAAAGATTTTTAAAGGTTTATTTATTTAGAAAGG
ATGGTGATGGTATCTCTGCAACTAGACCTGAACCTTATAAACAAAGATTCTTAAAAAGAA
TGAATGAAATCATTAAAAATAAAAACTATAAACATAAATCTGCTACTCAACAATATAATA
ATTCAATTATAAATAGTAATAATAATTATTATCATAATGAAGAAGAAGTTTTATTTGATA
CATAA
Length of full length seq. 785