>FC-AR23 (FC-AR23Q) /CSM/FC/FC-AR/FC-AR23Q.Seq.d/
XXXXXXXXXXTGGTATTGGATTCTTTAAAATCAATGGTACCAACTATAGTAATAATGATT
TAACATCATTATTACAATGTATTTTGAAGGCTGTTTCAACATTTTTAATCACTCATCCAC
ATTTCAATTTCCGTACCAATTTAGTCACAATCACATCACGTTTTACAGTTTACAAAGATA
AAGATATTGCAATGATGTGTTTGGAAGCCGTTAAATCATTATTTGAACATGATTCAACTG
GTGGTGAAACTTCATTAGGGGTAGTACGTTGTTTGGCAAATGTAGCAAAATCTGCAAACT
TTTTAATTGATCCAAAGGTTGTACGTGTTTTCTTGGCAATGCGTTTAACAGATGTAATCG
AGAAAATCAATCCATTCGGGTTCGCATCTGATGAGGCAAAGTTGGGTAAAAAAGATAGAA
AGCATTTAACTCGTACTGAAAAGAAGAAAAAAAAATAAAAATAATAAAAAAAAAAAGAAA
AAAAAAAAAAAGAAAAAATTGTTTAATTAATTAGTTAATAAAAAAAATTAAATAAAATAA
AAAAAACTATTATGCAATCAAAAAAAA

---GIGFFKINGTNYSNNDLTSLLQCILKAVSTFLITHPHFNFRTNLVTITSRFTVYKDK
DIAMMCLEAVKSLFEHDSTGGETSLGVVRCLANVAKSANFLIDPKVVRVFLAMRLTDVIE
KINPFGFASDEAKLGKKDRKHLTRTEKKKKK*k**kkkekkkkekiv*lis**kklnkik
ktimqskk

Frame A:
---GIGFFKINGTNYSNNDLTSLLQCILKAVSTFLITHPHFNFRTNLVTITSRFTVYKDK
DIAMMCLEAVKSLFEHDSTGGETSLGVVRCLANVAKSANFLIDPKVVRVFLAMRLTDVIE
KINPFGFASDEAKLGKKDRKHLTRTEKKKKK*k**kkkekkkkekiv*lis**kklnkik
ktimqskk


Frame B:
---vldslksmvptivimi*hhyynvf*rlfqhf*slihisisvpi*sqshhvlqftkik
ilq*cvwkplnhylnmiqlvvklh*g*yvvwqm*qnlqtf*liqrlyvfswqcv*qm*sr
ksihsgshlmrqswvkkiesi*lvlkrrkknknnkkkkkkkkkkklfn*lvnkkn*ik*k
kllcnqkk


Frame C:
---ywil*nqwyql****fniiitmyfegcfnifnhsstfqfpyqfshnhitfyslqr*r
ycndvfgsr*iii*t*fnww*nfirgstlfgkcskicklfn*skgctcflgnafnrcnre
nqsirvri**gkvg*kr*kafnsy*keekkikiikkkrkkkkrknclin*likkik*nkk
nyyaikk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AR23 (FC-AR23Q) /CSM/FC/FC-AR/FC-AR23Q.Seq.d/                      864   0.0
FC-AV14 (FC-AV14Q) /CSM/FC/FC-AV/FC-AV14Q.Seq.d/                      833   0.0
FC-AI19 (FC-AI19Q) /CSM/FC/FC-AI/FC-AI19Q.Seq.d/                      833   0.0
FC-AG15 (FC-AG15Q) /CSM/FC/FC-AG/FC-AG15Q.Seq.d/                      833   0.0
FC-125 (FC-125Q) /CSM/CG/CG-FC/FC-125Q.Seq.d/                         833   0.0
FC-AT12 (FC-AT12Q) /CSM/FC/FC-AT/FC-AT12Q.Seq.d/                      759   0.0
VFC523 (VFC523Q) /CSM/VF/VFC5-A/VFC523Q.Seq.d/                         44   0.002
VHJ533 (VHJ533Q) /CSM/VH/VHJ5-B/VHJ533Q.Seq.d/                         36   0.56
VHF296 (VHF296Q) /CSM/VH/VHF2-D/VHF296Q.Seq.d/                         36   0.56
VFO828 (VFO828Q) /CSM/VF/VFO8-B/VFO828Q.Seq.d/                         36   0.56

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC118636|AC118636.1 Mus musculus clone RP24-103G21, LOW-PASS SEQUENCE SAMPLING.    42  0.45  3
AC090744|AC090744.5 Homo sapiens chromosome 11, clone RP11-660K15, complete sequence.    44  1.8  1
AC139041|AC139041.3 Mus musculus chromosome 14 clone RP23-283B12 map 14, WORKING DRAFT SEQUENCE, 6 unordered pieces.    38  2.6  3
AL135798|AL135798.5 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP4-655N15.    36  3.3  3
BU659382|BU659382.1 cl47a02.z1 Hembase; Erythroid Precursor Cells (LCB:cl library) Homo sapiens cDNA clone cl47a02 5', mRNA sequence.    38  3.5  2
AP003363|AP003363.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 6/9.    38  3.7  5
BU659373|BU659373.1 cl46h04.z1 Hembase; Erythroid Precursor Cells (LCB:cl library) Homo sapiens cDNA clone cl46h04 5', mRNA sequence.    38  4.4  2
BU659361|BU659361.1 cl46g04.z1 Hembase; Erythroid Precursor Cells (LCB:cl library) Homo sapiens cDNA clone cl46g04 5', mRNA sequence.    38  4.5  2
AC130090|AC130090.4 Rattus norvegicus clone CH230-200D11, WORKING DRAFT SEQUENCE, 2 unordered pieces.    42  4.7  2
AC112762|AC112762.4 Rattus norvegicus clone CH230-53A18, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38  4.9  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8VI84) RecName: Full=Nucleolar complex protein 3 homolog;     ...    68   1e-10
AK292520_1(AK292520|pid:none) Homo sapiens cDNA FLJ77615 complet...    68   2e-10
BC078188_1(BC078188|pid:none) Danio rerio nucleolar complex asso...    68   2e-10
AK302028_1(AK302028|pid:none) Homo sapiens cDNA FLJ59781 complet...    68   2e-10
(Q6DRN3) RecName: Full=Nucleolar complex protein 3 homolog;     ...    68   2e-10
(Q8WTT2) RecName: Full=Nucleolar complex protein 3 homolog;     ...    68   2e-10
(Q91Y26) RecName: Full=Nucleolar complex protein 3 homolog;     ...    67   3e-10
(Q5R952) RecName: Full=Nucleolar complex protein 3 homolog;     ...    67   3e-10
CR382136_258(CR382136|pid:none) Debaryomyces hansenii strain CBS...    60   3e-08
DQ652941_1(DQ652941|pid:none) Arabidopsis thaliana clone 0000020...    59   1e-07

 psg: 0.66  gvh: 0.56  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.09
 nuc: 0.08  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for FC-AR23 is nuc

>FC-AR23Z.Seq
----------TGGTATTGGATTCTTTAAAATCAATGGTACCAACTATAGTAATAATGATT
TAACATCATTATTACAATGTATTTTGAAGGCTGTTTCAACATTTTTAATCACTCATCCAC
ATTTCAATTTCCGTACCAATTTAGTCACAATCACATCACGTTTTACAGTTTACAAAGATA
AAGATATTGCAATGATGTGTTTGGAAGCCGTTAAATCATTATTTGAACATGATTCAACTG
GTGGTGAAACTTCATTAGGGGTAGTACGTTGTTTGGCAAATGTAGCAAAATCTGCAAACT
TTTTAATTGATCCAAAGGTTGTACGTGTTTTCTTGGCAATGCGTTTAACAGATGTAATCG
AGAAAATCAATCCATTCGGGTTCGCATCTGATGAGGCAAAGTTGGGTAAAAAAGATAGAA
AGCATTTAACTCGTACTGAAAAGAAGAAAAAAAAATAAAAATAATAAAAAAAAAAAGAAA
AAAAAAAAAAAGAAAAAATTGTTTAATTAATTAGTTAATAAAAAAAATTAAATAAAATAA
AAAAAACTATTATGCAATCAAAAAAAA