>FC-AR20 (FC-AR20Q) /CSM/FC/FC-AR/FC-AR20Q.Seq.d/
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAATTCATTTGTAATTAGAAACGGCTTTG
GTTTAGTTAGAACTTTCAATACTAGATTATTCACCACTTCAACTCAAAATTTAGAGGGTG
AATTAAAGACTATTTTAGGACAAGCAAAATTATCAAAATTACAAGAAAAATTAAAGTTGG
ACCCAAGAAGTAAAATCACTTTCAATGATTTTAAAGGTATTGCTAAATAAGTTGGATTTG
AAGAAAAAGAATTTAACTCTGTTTCAAATGAACTCGCTCAATCTGGTTCAATCATCTACT
TACCAAATAGTTTAAATGAAAXXXXXXXXXXAAATAAATTAATTGAATCAAAGAAATCAG
AAATTAATAGTTTAAGACAAAAAATTCAACCATTAGAAGAAAAAAAACAAGTTATTGATA
GAAAAGCACATAGAAGAGCAACTGCAATTATTTGGACAGGTTTAGGTTATTGCTTTGCTC
AAGCTGCTATTTTAGCTAGATTAACATGGTGGGATTTATCATGGGATATCATTGAACCAG
TATCTTACTTTTTAACATTTGGTAGTGTTTTAATTGGTTACACCTATTTTACAATGACTA
AAACTGAATTCACATATGAAGCCTTAAATCATAGATTATTTTCAAAGAGACAAGATAAAC
TCTTTAAAAGAAATAACTTCCCAAAGGAAGATTATGAAAATTTAGTTCAAGCAATCGATA
AAAAAGAAAAAGAATTAAAAGAATTAGAACTTGCCACTAAATATGATCATACTCATTAAT
ATTCATACATATTCTCTTTTTTTTTTTTTAAAAAATAAAATAAAATAAGAAAGTAATGAT
AAAATAAAACAACAATAAATAAAAATTAATAAATAAAATAA

kkkkkkkkkmnsfvirngfglvrtfntrlfttstqnlegelktilgqaklsklqeklkld
prskitfndfkgiak*VGFEEKEFNSVSNELAQSGSIIYLPNSLNE---

---NKLIESKKSEINSLRQKIQPLEEKKQVIDRKAHRRATAIIWTGLGYCFAQAAILARL
TWWDLSWDIIEPVSYFLTFGSVLIGYTYFTMTKTEFTYEALNHRLFSKRQDKLFKRNNFP
KEDYENLVQAIDKKEKELKELELATKYDHTH*ysyifsffffkk*nkirk***nkttink
n**ik*

Frame A:
kkkkkkkkkk*ihl*letalv*lelsildysplqlki*rvn*rlf*dkqnyqnykkn*sw
tqevkslsmilkvllnkldlkkknltlfqmnslnlvqsstyqiv*mk---

---k*in*ikeirn**fktknstirrkktsy**kst*ksncnyldrfrlllcsscyfs*i
nmvgfimgyh*tsillfniw*cfnwlhlfynd*n*ihi*slks*iifketr*tl*kk*lp
kgrl*kfsssnr*krkrikrirtch*i*syslifihilffff*kik*nkkvmik*nnnk*
klinki

Frame B:
kkkkkkkkkneficn*krlwfs*nfqy*iihhfnskfrg*ikdyfrtskiikitrkikvg
pkk*nhfq*f*ryc*iswi*rkri*lcfk*trsiwfnhlltk*fk*---

---NKLIESKKSEINSLRQKIQPLEEKKQVIDRKAHRRATAIIWTGLGYCFAQAAILARL
TWWDLSWDIIEPVSYFLTFGSVLIGYTYFTMTKTEFTYEALNHRLFSKRQDKLFKRNNFP
KEDYENLVQAIDKKEKELKELELATKYDHTH*ysyifsffffkk*nkirk***nkttink
n**ik*

Frame C:
kkkkkkkkkmnsfvirngfglvrtfntrlfttstqnlegelktilgqaklsklqeklkld
prskitfndfkgiak*VGFEEKEFNSVSNELAQSGSIIYLPNSLNE---

---in*lnqrnqkliv*dkkfnh*kkknklliekhieeqlqlfgqv*viallkllf*ld*
hggiyhgislnqyltf*hlvvf*lvtpilq*lklnshmkp*iidyfqrdkinslkeitsq
rkimki*fkqsikkkkn*kn*nlplnmiilinihtyslffflknkik*esndkikqq*ik
ink*n

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AR20 (FC-AR20Q) /CSM/FC/FC-AR/FC-AR20Q.Seq.d/                     1340   0.0
AHK553 (AHK553Q) /CSM/AH/AHK5-C/AHK553Q.Seq.d/                         42   0.014
SHK622 (SHK622Q) /CSM/SH/SHK6-A/SHK622Q.Seq.d/                         40   0.056
VSK485 (VSK485Q) /CSM/VS/VSK4-D/VSK485Q.Seq.d/                         36   0.88
VSJ650 (VSJ650Q) /CSM/VS/VSJ6-C/VSJ650Q.Seq.d/                         36   0.88
VSE518 (VSE518Q) /CSM/VS/VSE5-A/VSE518Q.Seq.d/                         36   0.88
VSD228 (VSD228Q) /CSM/VS/VSD2-B/VSD228Q.Seq.d/                         36   0.88
VSB118 (VSB118Q) /CSM/VS/VSB1-A/VSB118Q.Seq.d/                         36   0.88
VSB101 (VSB101Q) /CSM/VS/VSB1-A/VSB101Q.Seq.d/                         36   0.88
VHI405 (VHI405Q) /CSM/VH/VHI4-A/VHI405Q.Seq.d/                         36   0.88

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AE015939|AE015939.1 Clostridium tetani E88, section 4 of 10 of the complete genome.    36  0.064  6
AC002410|AC002410.2 Homo sapiens BAC clone CTA-264L19 from 7p15-p21, complete sequence.    50  0.074  3
AQ469540|AQ469540.1 CITBI-E1-2594L6.TR CITBI-E1 Homo sapiens genomic clone 2594L6, genomic survey sequence.    48  0.18  1
BV015486|BV015486.1 S212P60472FC3.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    48  0.18  1
AC142310|AC142310.1 Pan troglodytes chromosome 7 clone RP43-45P13, complete sequence.    50  0.25  3
BM169706|BM169706.1 EST572229 PyBS Plasmodium yoelii yoelii cDNA clone PYCPV36 5' end, mRNA sequence.    46  0.71  1
AC016092|AC016092.3 Homo sapiens clone RP11-25F1, WORKING DRAFT SEQUENCE, 11 unordered pieces.    46  0.71  1
AP001681|AP001681.1 Homo sapiens genomic DNA, chromosome 21q, section 25/105.    42  0.84  5
BX005058|BX005058.3 Zebrafish DNA sequence from clone CH211-112K3 in linkage group 17.    40  0.94  5
AC116838|AC116838.6 Mus musculus clone RP24-387J12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    48  1.0  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC167298_1(BC167298|pid:none) Xenopus tropicalis hypothetical pr...   112   2e-23
AK161322_1(AK161322|pid:none) Mus musculus adult male testis cDN...   111   3e-23
(Q3UMR5) RecName: Full=Coiled-coil domain-containing protein 109A;    111   3e-23
(Q8NE86) RecName: Full=Coiled-coil domain-containing protein 109...   110   6e-23
AK315519_1(AK315519|pid:none) Homo sapiens cDNA, FLJ96585.            110   6e-23
AE014296_1192(AE014296|pid:none) Drosophila melanogaster chromos...   108   2e-22
AP008217_109(AP008217|pid:none) Oryza sativa (japonica cultivar-...   105   1e-21
BC010682_1(BC010682|pid:none) Homo sapiens coiled-coil domain co...   101   4e-20
DQ653251_1(DQ653251|pid:none) Arabidopsis thaliana clone 0000009...   101   4e-20
AK000654_1(AK000654|pid:none) Homo sapiens cDNA FLJ20647 fis, cl...   100   5e-20

 psg: 0.75  gvh: 0.37  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for FC-AR20 is cyt

>FC-AR20F.Seq
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAATTCATTTGTAATTAGAAACGGCTTTG
GTTTAGTTAGAACTTTCAATACTAGATTATTCACCACTTCAACTCAAAATTTAGAGGGTG
AATTAAAGACTATTTTAGGACAAGCAAAATTATCAAAATTACAAGAAAAATTAAAGTTGG
ACCCAAGAAGTAAAATCACTTTCAATGATTTTAAAGGTATTGCTAAATAAGTTGGATTTG
AAGAAAAAGAATTTAACTCTGTTTCAAATGAACTCGCTCAATCTGGTTCAATCATCTACT
TACCAAATAGTTTAAATGAAA----------

>FC-AR20Z.Seq
----------AAATAAATTAATTGAATCAAAGAAATCAGAAATTAATAGTTTAAGACAAA
AAATTCAACCATTAGAAGAAAAAAAACAAGTTATTGATAGAAAAGCACATAGAAGAGCAA
CTGCAATTATTTGGACAGGTTTAGGTTATTGCTTTGCTCAAGCTGCTATTTTAGCTAGAT
TAACATGGTGGGATTTATCATGGGATATCATTGAACCAGTATCTTACTTTTTAACATTTG
GTAGTGTTTTAATTGGTTACACCTATTTTACAATGACTAAAACTGAATTCACATATGAAG
CCTTAAATCATAGATTATTTTCAAAGAGACAAGATAAACTCTTTAAAAGAAATAACTTCC
CAAAGGAAGATTATGAAAATTTAGTTCAAGCAATCGATAAAAAAGAAAAAGAATTAAAAG
AATTAGAACTTGCCACTAAATATGATCATACTCATTAATATTCATACATATTCTCTTTTT
TTTTTTTTAAAAAATAAAATAAAATAAGAAAGTAATGATAAAATAAAACAACAATAAATA
AAAATTAATAAATAAAATAA

>FC-AR20P.Seq
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAATTCATTTGTAATTAGAAACGGCTTTG
GTTTAGTTAGAACTTTCAATACTAGATTATTCACCACTTCAACTCAAAATTTAGAGGGTG
AATTAAAGACTATTTTAGGACAAGCAAAATTATCAAAATTACAAGAAAAATTAAAGTTGG
ACCCAAGAAGTAAAATCACTTTCAATGATTTTAAAGGTATTGCTAAATAAGTTGGATTTG
AAGAAAAAGAATTTAACTCTGTTTCAAATGAACTCGCTCAATCTGGTTCAATCATCTACT
TACCAAATAGTTTAAATGAAA----------AAATAAATTAATTGAATCAAAGAAATCAG
AAATTAATAGTTTAAGACAAAAAATTCAACCATTAGAAGAAAAAAAACAAGTTATTGATA
GAAAAGCACATAGAAGAGCAACTGCAATTATTTGGACAGGTTTAGGTTATTGCTTTGCTC
AAGCTGCTATTTTAGCTAGATTAACATGGTGGGATTTATCATGGGATATCATTGAACCAG
TATCTTACTTTTTAACATTTGGTAGTGTTTTAATTGGTTACACCTATTTTACAATGACTA
AAACTGAATTCACATATGAAGCCTTAAATCATAGATTATTTTCAAAGAGACAAGATAAAC
TCTTTAAAAGAAATAACTTCCCAAAGGAAGATTATGAAAATTTAGTTCAAGCAATCGATA
AAAAAGAAAAAGAATTAAAAGAATTAGAACTTGCCACTAAATATGATCATACTCATTAAT
ATTCATACATATTCTCTTTTTTTTTTTTTAAAAAATAAAATAAAATAAGAAAGTAATGAT
AAAATAAAACAACAATAAATAAAAATTAATAAATAAAATAA