>FC-AR19 (FC-AR19Q) /CSM/FC/FC-AR/FC-AR19Q.Seq.d/
XXXXXXXXXXATGATGCAAGGTGTTGGTGCCCCAACTAGAGTTCGTTTATTATTAGATGG
TCGTTCAGGTTGTTTCAAACCAAGCCGTGATGGTGAAAGAAAGAGAAAATCAGTTCGTGG
TTGTATCGTTGCTGAAGATATCGCCTCTTTACAATTAATCATTGTCAAGAAAGGTGATGC
TGAAATTCCAGGCCTCACTGATGTCTCATTCCCAGCCTCAAAAGGTCCAAAGAGAGCCTC
AAACATTAGAAAACTCTTCAAATTATCAAAAGACGAAGATGTCCGTTCTTTCGTCATCCG
TCGTGAATTACCAGCCACCGACAAAAGAAAAGCTAAATCAAAAGCACCAAAGATCCAACG
TTTAGTTACCCCAACCACCGTTGCCCGTAGAAAGGCTCTCCGTGCTAAAAAAGCTGCTCG
TCACACTAAAGCCAGCAATGAAGCCGCCGAATACGCTAAACTCGTTGCCCAAAGACAACA
AGCTAAAGCCAAGAGATCCGTCAAAGTTTCAAGCAAAAAAGTTGTTGCCAAGTAAATAAA
TAATACTTTTTTCCCTATAAAAAAAAAAAAAAAAA

---MQGVGAPTRVRLLLDGRSGCFKPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAE
IPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFVIRRELPATDKRKAKSKAPKIQRL
VTPTTVARRKALRAKKAARHTKASNEAAEYAKLVAQRQQAKAKRSVKVSSKKVVAK*inn
tffpikkkkk

Frame A:
---*ckvlvpqlefvyy*mvvqvvsnqavmvkerenqfvvvsllkisplyn*slsrkvml
kfqaslmshsqpqkvqrepqtlenssnyqktkmsvlsssvvnyqpptkeklnqkhqrsnv
*lpqpplpverlsvlkkllvtlkpamkppntlnslpkdnklkprdpskfqakkllpsk*i
ilfsl*kkkkk


Frame B:
---darcwcpn*ssfiirwsfrlfqtkp*w*kkekisswlyrc*ryrlftinhcqer*c*
nsrph*clipslkrskeslkh*ktlqiikrrrcpffrhps*itshrqkks*ikstkdptf
sypnhrcp*kgspc*kscssh*sqq*srrir*trcpktts*sqeirqsfkqksccqvnk*
yffpykkkkk


Frame C:
---MQGVGAPTRVRLLLDGRSGCFKPSRDGERKRKSVRGCIVAEDIASLQLIIVKKGDAE
IPGLTDVSFPASKGPKRASNIRKLFKLSKDEDVRSFVIRRELPATDKRKAKSKAPKIQRL
VTPTTVARRKALRAKKAARHTKASNEAAEYAKLVAQRQQAKAKRSVKVSSKKVVAK*inn
tffpikkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC395 (VSC395Q) /CSM/VS/VSC3-D/VSC395Q.Seq.d/                       1086   0.0
SLE610 (SLE610Q) /CSM/SL/SLE6-A/SLE610Q.Seq.d/                       1086   0.0
SLA276 (SLA276Q) /CSM/SL/SLA2-D/SLA276Q.Seq.d/                       1086   0.0
FC-AY04 (FC-AY04Q) /CSM/FC/FC-AY/FC-AY04Q.Seq.d/                     1086   0.0
FC-AR19 (FC-AR19Q) /CSM/FC/FC-AR/FC-AR19Q.Seq.d/                     1086   0.0
FC-AJ17 (FC-AJ17Q) /CSM/FC/FC-AJ/FC-AJ17Q.Seq.d/                     1086   0.0
FC-036 (FC-036Q) /CSM/CG/CG-FC/FC-036Q.Seq.d/                        1086   0.0
VSJ585 (VSJ585Q) /CSM/VS/VSJ5-D/VSJ585Q.Seq.d/                       1059   0.0
FC-AP05 (FC-AP05Q) /CSM/FC/FC-AP/FC-AP05Q.Seq.d/                     1055   0.0
VSF608 (VSF608Q) /CSM/VS/VSF6-A/VSF608Q.Seq.d/                       1043   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

J01350|J01350.1 yeast (S.carlsbergensis) ribosomal protein S10 gene.    54  2e-07  3
X02746|X02746.1 Yeast gene for ribosomal protein S10-2.           54  3e-07  3
AX072910|AX072910.1 Sequence 21 from Patent WO0102550.            54  3e-07  3
AX073160|AX073160.1 Sequence 271 from Patent WO0102550.           54  3e-07  3
Z36050|Z36050.1 S.cerevisiae chromosome II reading frame ORF YBR181c.    54  5e-07  3
BE207601|BE207601.1 bb65b04.y1 NIH_MGC_9 Homo sapiens cDNA clone IMAGE:3030319 5' similar to gb:X67309_rna1 40S RIBOSOMAL PROTEIN S6 (HUMAN); gb:Y00348 Mouse mRNA for ribosomal protein S6 (MOUSE);, mRNA sequence.    66  5e-07  1
BF978278|BF978278.1 602148238F1 NIH_MGC_62 Homo sapiens cDNA clone IMAGE:4307096 5', mRNA sequence.    64  2e-06  1
T37994|T37994.1 EST103316 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence.    54  3e-06  2
T38015|T38015.1 EST103352 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 5' end, mRNA sequence.    54  5e-06  2
CD709754|CD709754.1 EST26281 human nasopharynx Homo sapiens cDNA, mRNA sequence.    62  8e-06  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UU3) RecName: Full=40S ribosomal protein S6;                      265   5e-70
(Q9BMX5) RecName: Full=40S ribosomal protein S6;  &AF294917_1(AF...   169   5e-41
(Q2PQM1) RecName: Full=40S ribosomal protein S6;  &DQ307202_1(DQ...   162   6e-39
AY752838_1(AY752838|pid:none) Culicoides sonorensis clone CsRPS6...   161   1e-38
AE014298_1126(AE014298|pid:none) Drosophila melanogaster chromos...   160   2e-38
AM048933_1(AM048933|pid:none) Carabus granulatus partial mRNA fo...   160   3e-38
(Q9U761) RecName: Full=40S ribosomal protein S6;                      159   6e-38
AF154067_1(AF154067|pid:none) Aedes aegypti ribosomal protein S6...   159   6e-38
(Q6BXH8) RecName: Full=40S ribosomal protein S6;  &CR382134_126(...   157   1e-37
AJ438987_1(AJ438987|pid:none) Paracentrotus lividus mRNA for S6 ...   157   2e-37

 psg: 0.65  gvh: 0.37  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.03
 nuc: 0.20  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for FC-AR19 is cyt

>FC-AR19Z.Seq
----------ATGATGCAAGGTGTTGGTGCCCCAACTAGAGTTCGTTTATTATTAGATGG
TCGTTCAGGTTGTTTCAAACCAAGCCGTGATGGTGAAAGAAAGAGAAAATCAGTTCGTGG
TTGTATCGTTGCTGAAGATATCGCCTCTTTACAATTAATCATTGTCAAGAAAGGTGATGC
TGAAATTCCAGGCCTCACTGATGTCTCATTCCCAGCCTCAAAAGGTCCAAAGAGAGCCTC
AAACATTAGAAAACTCTTCAAATTATCAAAAGACGAAGATGTCCGTTCTTTCGTCATCCG
TCGTGAATTACCAGCCACCGACAAAAGAAAAGCTAAATCAAAAGCACCAAAGATCCAACG
TTTAGTTACCCCAACCACCGTTGCCCGTAGAAAGGCTCTCCGTGCTAAAAAAGCTGCTCG
TCACACTAAAGCCAGCAATGAAGCCGCCGAATACGCTAAACTCGTTGCCCAAAGACAACA
AGCTAAAGCCAAGAGATCCGTCAAAGTTTCAAGCAAAAAAGTTGTTGCCAAGTAAATAAA
TAATACTTTTTTCCCTATAAAAAAAAAAAAAAAAA