FC-AR18
Library FC
(Link to library)
Clone ID FC-AR18
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16528-1
Original site URL
Representative seq. ID FC-AR18E
(Link to Original site)
Representative DNA sequence
>FC-AR18 (FC-AR18Q) /CSM/FC/FC-AR/FC-AR18Q.Seq.d/
CATAAAATGATCTCCAAATTCTCTCTCTTTGTCGAAATCGGACGTGTTGTTGTCATCAAC
TATGGTGAATACATCAACAAAACTGCCGTCATCATTGATGTCTTGGATCAAAACAGAGCT
TTAGTTGCTGGTCCACACAGTGGCGTCGAACGTCACATCATTAACTTCAAATGGATCAAT
CTTACTCCATTAAAAGTTAACATCCAAAGAGGTGCCAGAATTAACACCCTCATCGCTGCC
ATCAAAGCTGCTGACCTCGAAACCAAAATTGCTGCCCTCTCTGCCGTTAAGAAAATCAAC
GCAAGAGCCACCAAATCAAACCAAACTGATTTCGAACGTTTCAAAGCCAACCTCATCAGA
CGTAAACTCAACAAGAAAGTTTCAGGTGAAGTTAAGAAATTAGTTAACATTGCCAACAGA
GCTGCTCACAAGAAAGCTGTTGCCCAAAAAGCTGCTGGTCACGTCAAGAAAACTTTATAA
ATAAAATGTTTACTAATAATATAAAATTTTAAAAATATATAAAAACTATTAGTATTATTT
TAGACCTCAAAAAAAAAAAAAAAAAAA
sequence update 1997. 4. 9
Translated Amino Acid sequence
HKMISKFSLFVEIGRVVVINYGEYINKTAVIIDVLDQNRALVAGPHSGVERHIINFKWIN
LTPLKVNIQRGARINTLIAAIKAADLETKIAALSAVKKINARATKSNQTDFERFKANLIR
RKLNKKVSGEVKKLVNIANRAAHKKAVAQKAAGHVKKTL*ikcllii*nfkni*kllvlf
*tskkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
HKMISKFSLFVEIGRVVVINYGEYINKTAVIIDVLDQNRALVAGPHSGVERHIINFKWIN
LTPLKVNIQRGARINTLIAAIKAADLETKIAALSAVKKINARATKSNQTDFERFKANLIR
RKLNKKVSGEVKKLVNIANRAAHKKAVAQKAAGHVKKTL*ikcllii*nfkni*kllvlf
*tskkkkkk


Frame B:
ik*spnslslsksdvllsstmvntstklpsslmswiktel*llvhtvasnvtsltsngsi
llh*kltskevpeltpsslpsklltskpkllpslplrkstqeppnqtklisnvskptssd
vnstrkfqvklrn*ltlptelltrkllpkkllvtsrklyk*nvy**ykilkiykny*yyf
rpqkkkkk


Frame C:
*ndlqilslcrnrtccchqlw*ihqqncrhh*clgskqsfscwstqwrrtshh*lqmdqs
ysiks*hpkrcqn*hphrchqsc*prnqnccplcr*enqrkshqikpn*frtfqsqphqt
*tqqesfr*s*eis*hcqqscsqesccpkscwsrqenfinkmftnnikf*kyiktisiil
dlkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD663 (VSD663Q) /CSM/VS/VSD6-C/VSD663Q.Seq.d/ 952 0.0
VHC743 (VHC743Q) /CSM/VH/VHC7-B/VHC743Q.Seq.d/ 952 0.0
FC-BE24 (FC-BE24Q) /CSM/FC/FC-BE/FC-BE24Q.Seq.d/ 952 0.0
FC-AR18 (FC-AR18Q) /CSM/FC/FC-AR/FC-AR18Q.Seq.d/ 952 0.0
FC-AP24 (FC-AP24Q) /CSM/FC/FC-AP/FC-AP24Q.Seq.d/ 952 0.0
FC-272 (FC-272Q) /CSM/CG/CG-FC/FC-272Q.Seq.d/ 952 0.0
VSG769 (VSG769Q) /CSM/VS/VSG7-C/VSG769Q.Seq.d/ 938 0.0
VSG485 (VSG485Q) /CSM/VS/VSG4-D/VSG485Q.Seq.d/ 930 0.0
SSG249 (SSG249Q) /CSM/SS/SSG2-C/SSG249Q.Seq.d/ 928 0.0
VHE675 (VHE675Q) /CSM/VH/VHE6-D/VHE675Q.Seq.d/ 914 0.0

own update 2002.10. 6
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AY177419|AY177419.1 Lactobacillus acidophilus sucrose PTS transporter (scrA), sucrose hydrolase (scrB), and sucrose operon transcriptional repressor (scrR) genes, complete cds. 38 0.14 3
AZ650440|AZ650440.1 1M0520B12R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0520B12 R, DNA sequence. 46 0.51 1
AL672152|AL672152.8 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP23-426A16. 46 0.51 1
BX469929|BX469929.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 36 1.2 5
AL691417|AL691417.10 Mouse DNA sequence from clone RP23-110M20 on chromosome 4. 34 1.9 3
AC007284|AC007284.4 Homo sapiens BAC clone RP11-558K21 from Y, complete sequence. 36 3.3 5
AC131253|AC131253.1 Homo sapiens chromosome 8 clone RP11-920J18 map 8, LOW-PASS SEQUENCE SAMPLING. 36 3.4 2
AC068904|AC068904.44 Mus musculus chromosome 9 clone rp23-221i11 strain C57BL/6J, complete sequence. 38 6.5 4
AC147232|AC147232.2 Mus musculus chromosome UNK clone RP23-311C15, WORKING DRAFT SEQUENCE, 15 unordered pieces. 36 7.4 5
AC108346|AC108346.4 Rattus norvegicus clone CH230-36F11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 42 8.0 1
dna update 2003.12.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54Z09) RecName: Full=60S ribosomal protein L14; 265 8e-70
EU955338_1(EU955338|pid:none) Zea mays clone 1527557 60 ribosoma... 117 2e-25
CP001142_62(CP001142|pid:none) Phaeodactylum tricornutum CCAP 10... 102 6e-21
BC092249_1(BC092249|pid:none) Mus musculus ribosomal protein L14... 99 8e-20
AK007807_1(AK007807|pid:none) Mus musculus 10 day old male pancr... 99 8e-20
(Q9CR57) RecName: Full=60S ribosomal protein L14; &AK012277_1(A... 99 8e-20
AK010600_1(AK010600|pid:none) Mus musculus ES cells cDNA, RIKEN ... 99 8e-20
(P50914) RecName: Full=60S ribosomal protein L14; AltName: Full=... 98 1e-19
AY891859_1(AY891859|pid:none) Synthetic construct Homo sapiens c... 98 1e-19
BC029036_1(BC029036|pid:none) Homo sapiens ribosomal protein L14... 98 1e-19
protein update 2009. 7. 2
PSORT

psg: 0.85 gvh: 0.32 alm: 0.35 top: 0.23 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vacuolar
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for FC-AR18 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AR18E
Full length Seq.
>FC-AR18E.Seq
CATAAAATGATCTCCAAATTCTCTCTCTTTGTCGAAATCGGACGTGTTGTTGTCATCAAC
TATGGTGAATACATCAACAAAACTGCCGTCATCATTGATGTCTTGGATCAAAACAGAGCT
TTAGTTGCTGGTCCACACAGTGGCGTCGAACGTCACATCATTAACTTCAAATGGATCAAT
CTTACTCCATTAAAAGTTAACATCCAAAGAGGTGCCAGAATTAACACCCTCATCGCTGCC
ATCAAAGCTGCTGACCTCGAAACCAAAATTGCTGCCCTCTCTGCCGTTAAGAAAATCAAC
GCAAGAGCCACCAAATCAAACCAAACTGATTTCGAACGTTTCAAAGCCAACCTCATCAGA
CGTAAACTCAACAAGAAAGTTTCAGGTGAAGTTAAGAAATTAGTTAACATTGCCAACAGA
GCTGCTCACAAGAAAGCTGTTGCCCAAAAAGCTGCTGGTCACGTCAAGAAAACTTTATAA
ATAAAATGTTTACTAATAATATAAAATTTTAAAAATATATAAAAACTATTAGTATTATTT
TAGACCTCAAAAAAAAAAAAAAAAAAA
Length of full length seq. 567