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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AR17
Library FC
(Link to library)
Clone ID FC-AR17
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15982-1
Original site URL
Representative seq. ID FC-AR17P
(Link to Original site)
Representative DNA sequence 
>FC-AR17 (FC-AR17Q) /CSM/FC/FC-AR/FC-AR17Q.Seq.d/
GAGTGAAGAGAATTACATATCAATCATAATAATCATAATAATTAAATAATTAATAATTTG
TGTAGTATATATATATAATATAGAAAATAATTTTTATATGGTGCACCGTACATAAAAAAT
AATAATAATAAAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAAAAAAATAATAAA
AAAAAAAAAAAGAAATAATTTTTCGCTTTCACAAACACAAACACAAACTCCCCAAAAAAT
TAAAATAAAATTATTAAATTAAATXXXXXXXXXXCACATTTTTTAAAATGAGAAAAATGT
TTTTTGAAAATCAATTAGATGATTCCAAATATTTGAATGTTTTATATGGATTATCATCTT
TTGGACCAGATGGTACACCAACTAATATACACACTGGTGCTGGTAATAATCCTCCACCTC
AACTATCGAATAGTGGTTCAACAAACTATGGCTATAGTCCACTATCACAACAAAATAATC
CAAATAATATAACAAATTATAATTCAACAAATCCAGCATCTCAAAATCAACCAACCTATT
ATAATAATTATCCAACTACTCCAACTCGATATCATAATTCCTCTGGTCCATATTCACCAA
CTGGAAATAATTTATCAATGTCTCAACCTAATACCCCTTCTAAAAATAATTCAAATGATT
ATTATCATAAAAAGAGTTAATAGTACTAAACATTTTTTAAAAAAAAAAAAAAACAAAACA
AAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAACAAA
CAAACAAACAAACAAAACTTTTTGTATAATCAAAATT
sequence update 1997. 4.15
Translated Amino Acid sequence 
e*relhinhnnhnn*iinnlcsiyi*yrk*flygapyiknnnnkkkkk*kkknkkkknnk
kkkkk*ffaftntntnspkn*NKIIKLN---

---TFFKMRKMFFENQLDDSKYLNVLYGLSSFGPDGTPTNIHTGAGNNPPPQLSNSGSTN
YGYSPLSQQNNPNNITNYNSTNPASQNQPTYYNNYPTTPTRYHNSSGPYSPTGNNLSMSQ
PNTPSKNNSNDYYHKKS**y*tffkkkkkqnktkqnktkqnktkqnktkkqtnkqtklfv
*sk
Translated Amino Acid sequence (All Frames) 
Frame A:
e*relhinhnnhnn*iinnlcsiyi*yrk*flygapyiknnnnkkkkk*kkknkkkknnk
kkkkk*ffaftntntnspkn*NKIIKLN---

---hif*neknvf*ksir*fqifecfiwiiifwtrwytn*ythwcw**sststie*wfnk
lwl*stittk*sk*ynkl*fnkssiskstnll**lsnysnsis*flwsiftnwk*finvs
t*ypf*k*fk*lls*kelivlnif*kkkktkqnktkqnktkqnktkqnkktnkqtnktfc
iiki

Frame B:
seenyisiiiiiiik*liicvvyiyniennfymvhrt*kiiiikkkknkkkkikkkkiik
kkkrnnfslsqtqtqtpqkikiklln*---

---TFFKMRKMFFENQLDDSKYLNVLYGLSSFGPDGTPTNIHTGAGNNPPPQLSNSGSTN
YGYSPLSQQNNPNNITNYNSTNPASQNQPTYYNNYPTTPTRYHNSSGPYSPTGNNLSMSQ
PNTPSKNNSNDYYHKKS**y*tffkkkkkqnktkqnktkqnktkqnktkkqtnkqtklfv
*sk

Frame C:
vkrityqs**s**lnn**fv*yiyii*kiifiwctvhkk****kkkkikkkk*kkkk**k
kkkeiifrfhkhkhklpkklk*ny*ik---

---hflk*ekcflkin*mipni*mfymdyhlldqmvhqliytlvlviilhlnyrivvqqt
maivhyhnkiiqii*qiiiqqiqhlkinqpiiiiiqllqldiiiplvhihqleiiyqcln
lipllkiiqmiiiikrvnstkhflkkkknktkqnktkqnktkqnktkqknkqtnkqnfly
nqn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AR17 (FC-AR17Q) /CSM/FC/FC-AR/FC-AR17Q.Seq.d/                      841   0.0
SLJ805 (SLJ805Q) /CSM/SL/SLJ8-A/SLJ805Q.Seq.d/                        462   e-129
AFL207 (AFL207Q) /CSM/AF/AFL2-A/AFL207Q.Seq.d/                        450   e-125
SSL772 (SSL772Q) /CSM/SS/SSL7-C/SSL772Q.Seq.d/                         38   0.21
SSL127 (SSL127Q) /CSM/SS/SSL1-B/SSL127Q.Seq.d/                         38   0.21
SSH593 (SSH593Q) /CSM/SS/SSH5-D/SSH593Q.Seq.d/                         38   0.21
SSD483 (SSD483Q) /CSM/SS/SSD4-D/SSD483Q.Seq.d/                         38   0.21
SSB770 (SSB770Q) /CSM/SS/SSB7-C/SSB770Q.Seq.d/                         38   0.21
SSA533 (SSA533Q) /CSM/SS/SSA5-B/SSA533Q.Seq.d/                         38   0.21
SLA760 (SLA760Q) /CSM/SL/SLA7-C/SLA760Q.Seq.d/                         38   0.21
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40  0.091  8
AZ525310|AZ525310.1 242PbE12 Pb MBN #21 Plasmodium berghei genomic 3', DNA sequence.    48  0.17  1
AL407535|AL407535.1 T7 end of clone AV0AA001H05 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    36  0.45  3
AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    38  0.51  8
AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    32  0.68  6
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12 section 4 of 9 of the complete sequence.    42  0.75  5
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42  1.1  5
AC011307|AC011307.2 Homo sapiens clone RP11-493M14, WORKING DRAFT SEQUENCE, 4 unordered pieces.    40  2.1  2
BX470263|BX470263.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-15P9.    40  2.4  4
AP001162|AP001162.3 Homo sapiens genomic DNA, chromosome 18q12 clone:RP11-746K4, WORKING DRAFT SEQUENCE, 10 unordered pieces.    44  2.6  1
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR940347_536(CR940347|pid:none) Theileria annulata strain Ankara...    33   8.1
protein update 2008.11.10
PSORT 

 psg: 0.55  gvh: 0.34  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic

>> prediction for FC-AR17 is nuc
5' end seq. ID FC-AR17F
5' end seq. 
>FC-AR17F.Seq
GAGTGAAGAGAATTACATATCAATCATAATAATCATAATAATTAAATAATTAATAATTTG
TGTAGTATATATATATAATATAGAAAATAATTTTTATATGGTGCACCGTACATAAAAAAT
AATAATAATAAAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAAAAAAATAATAAA
AAAAAAAAAAAGAAATAATTTTTCGCTTTCACAAACACAAACACAAACTCCCCAAAAAAT
TAAAATAAAATTATTAAATTAAAT----------
Length of 5' end seq. 264
3' end seq. ID FC-AR17Z
3' end seq. 
>FC-AR17Z.Seq
----------CACATTTTTTAAAATGAGAAAAATGTTTTTTGAAAATCAATTAGATGATT
CCAAATATTTGAATGTTTTATATGGATTATCATCTTTTGGACCAGATGGTACACCAACTA
ATATACACACTGGTGCTGGTAATAATCCTCCACCTCAACTATCGAATAGTGGTTCAACAA
ACTATGGCTATAGTCCACTATCACAACAAAATAATCCAAATAATATAACAAATTATAATT
CAACAAATCCAGCATCTCAAAATCAACCAACCTATTATAATAATTATCCAACTACTCCAA
CTCGATATCATAATTCCTCTGGTCCATATTCACCAACTGGAAATAATTTATCAATGTCTC
AACCTAATACCCCTTCTAAAAATAATTCAAATGATTATTATCATAAAAAGAGTTAATAGT
ACTAAACATTTTTTAAAAAAAAAAAAAAACAAAACAAAACAAAACAAAACAAAACAAAAC
AAAACAAAACAAAACAAAACAAAACAAAAAAACAAACAAACAAACAAACAAAACTTTTTG
TATAATCAAAATT
Length of 3' end seq. 543
Connected seq. ID FC-AR17P
Connected seq. 
>FC-AR17P.Seq
GAGTGAAGAGAATTACATATCAATCATAATAATCATAATAATTAAATAATTAATAATTTG
TGTAGTATATATATATAATATAGAAAATAATTTTTATATGGTGCACCGTACATAAAAAAT
AATAATAATAAAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAAAAAAATAATAAA
AAAAAAAAAAAGAAATAATTTTTCGCTTTCACAAACACAAACACAAACTCCCCAAAAAAT
TAAAATAAAATTATTAAATTAAAT----------CACATTTTTTAAAATGAGAAAAATGT
TTTTTGAAAATCAATTAGATGATTCCAAATATTTGAATGTTTTATATGGATTATCATCTT
TTGGACCAGATGGTACACCAACTAATATACACACTGGTGCTGGTAATAATCCTCCACCTC
AACTATCGAATAGTGGTTCAACAAACTATGGCTATAGTCCACTATCACAACAAAATAATC
CAAATAATATAACAAATTATAATTCAACAAATCCAGCATCTCAAAATCAACCAACCTATT
ATAATAATTATCCAACTACTCCAACTCGATATCATAATTCCTCTGGTCCATATTCACCAA
CTGGAAATAATTTATCAATGTCTCAACCTAATACCCCTTCTAAAAATAATTCAAATGATT
ATTATCATAAAAAGAGTTAATAGTACTAAACATTTTTTAAAAAAAAAAAAAAACAAAACA
AAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAAACAAA
CAAACAAACAAACAAAACTTTTTGTATAATCAAAATT
Length of connected seq. 807
Full length Seq ID -
Full length Seq. -
Length of full length seq. -