FC-AR16
Library FC
(Link to library)
Clone ID FC-AR16
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15457-1
Original site URL
Representative seq. ID FC-AR16E
(Link to Original site)
Representative DNA sequence
>FC-AR16 (FC-AR16Q) /CSM/FC/FC-AR/FC-AR16Q.Seq.d/
GGTGTATGGCAATTAAAAAAATTAGCAATTAATTATTGCGAATTTTCTGGAAGTAGTAAA
TATGTAAGAAATATTTTAAACTCGAAAGTAGAAAAATTTAAAAGTGTTAACCCACAAATC
GAATTTGAATATAAGGTCAATCGTGGATCACACCCATACTTAATAGCAACATATGAATCA
GGAGTAACAAAAACTGTACCATTAAGAGGTAGAACAGAAGAAAAAGTTTTAAAACATATT
CAAAATCTTAAAGATACTTCAGGTGAAAAACCAAGAAAGTTTGGTGATAGATATATTTCT
AAAACAGAATCAATTCAAGGATTGTGGAATCCATTCATTAATTTTAGTAACAGTGAACAA
TAAATATAAATAAATAAACAAACAGAA
sequence update 1997. 4.11
Translated Amino Acid sequence
GVWQLKKLAINYCEFSGSSKYVRNILNSKVEKFKSVNPQIEFEYKVNRGSHPYLIATYES
GVTKTVPLRGRTEEKVLKHIQNLKDTSGEKPRKFGDRYISKTESIQGLWNPFINFSNSEQ
*i*inkqte


Translated Amino Acid sequence (All Frames)
Frame A:
GVWQLKKLAINYCEFSGSSKYVRNILNSKVEKFKSVNPQIEFEYKVNRGSHPYLIATYES
GVTKTVPLRGRTEEKVLKHIQNLKDTSGEKPRKFGDRYISKTESIQGLWNPFINFSNSEQ
*i*inkqte


Frame B:
vygn*kn*qliianflevvnm*eif*trk*knlkvlthksnlnirsivdhtht**qhmnq
e*qklyh*eveqkkkf*nifkilkilqvknqeslvidiflkqnqfkdcgihslilvtvnn
kyk*inkq


Frame C:
cmaikkisn*llrifwk**ickkyfklesrki*kc*ptnri*i*gqswitpilnsni*ir
snknctikr*nrrksfktysks*ryfr*ktkkvw**iyf*nrinsrivesih*f**q*ti
nink*tnr


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSG474 (VSG474Q) /CSM/VS/VSG4-D/VSG474Q.Seq.d/ 726 0.0
VSD147 (VSD147Q) /CSM/VS/VSD1-B/VSD147Q.Seq.d/ 726 0.0
VSB810 (VSB810Q) /CSM/VS/VSB8-A/VSB810Q.Seq.d/ 726 0.0
VFG822 (VFG822Q) /CSM/VF/VFG8-A/VFG822Q.Seq.d/ 726 0.0
FC-AR16 (FC-AR16Q) /CSM/FC/FC-AR/FC-AR16Q.Seq.d/ 726 0.0
SHA548 (SHA548Q) /CSM/SH/SHA5-B/SHA548Q.Seq.d/ 42 0.006
VSI394 (VSI394Q) /CSM/VS/VSI3-D/VSI394Q.Seq.d/ 40 0.024
VSD558 (VSD558Q) /CSM/VS/VSD5-C/VSD558Q.Seq.d/ 40 0.024
VSD443 (VSD443Q) /CSM/VS/VSD4-B/VSD443Q.Seq.d/ 40 0.024
VHL793 (VHL793Q) /CSM/VH/VHL7-D/VHL793Q.Seq.d/ 40 0.024

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX511014|BX511014.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-143E20. 44 2e-06 10
AL034558|AL034558.3 Plasmodium falciparum MAL3P2. 40 6e-06 10
AC102927|AC102927.4 Mus musculus clone RP24-236H23, WORKING DRAFT SEQUENCE, 5 unordered pieces. 52 1e-05 6
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence. 40 1e-05 9
CD323915|CD323915.1 StrPu537.002277 Sea urchin embryo 20hr blastula stage cDNA library MPMGp537 Strongylocentrotus purpuratus cDNA clone CALTp537E2315;MPI_537_15E23 3', mRNA sequence. 44 2e-05 2
AC112301|AC112301.5 Rattus norvegicus clone CH230-63O15, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 52 4e-05 5
AC138782|AC138782.4 Homo sapiens BAC clone RP11-264J9 from 4, complete sequence. 42 4e-05 6
BX572637|BX572637.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 38 4e-05 8
AC142370|AC142370.1 Rattus norvegicus clone CH230-506F12, WORKING DRAFT SEQUENCE, 29 unordered pieces. 46 4e-05 5
CA090757|CA090757.1 SCSGAM2106E06.g AM2 Saccharum officinarum cDNA clone SCSGAM2106E06 5', mRNA sequence. 40 5e-05 2
dna update 2003.12.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF145491_1(EF145491|pid:none) Populus trichocarpa clone WS01125_... 94 1e-18
AK227646_1(AK227646|pid:none) Arabidopsis thaliana mRNA for hypo... 91 1e-17
AC151460_2(AC151460|pid:none) Medicago truncatula clone mth2-6f1... 89 4e-17
AM484004_1(AM484004|pid:none) Vitis vinifera contig VV78X217648.... 87 2e-16
EU960743_1(EU960743|pid:none) Zea mays clone 228174 mitochondria... 85 9e-16
AC105928_7(AC105928|pid:none) Oryza sativa (japonica cultivar-gr... 84 1e-15
EU968107_1(EU968107|pid:none) Zea mays clone 314426 mitochondria... 81 1e-14
BT071538_1(BT071538|pid:none) Picea sitchensis clone WS02921_H03... 77 1e-13
CR548612_53(CR548612|pid:none) Paramecium tetraurelia macronucle... 72 8e-12
AP007166_421(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 69 7e-11
protein update 2009. 7. 2
PSORT

psg: 0.75 gvh: 0.26 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.05
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for FC-AR16 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AR16E
Full length Seq.
>FC-AR16E.Seq
GGTGTATGGCAATTAAAAAAATTAGCAATTAATTATTGCGAATTTTCTGGAAGTAGTAAA
TATGTAAGAAATATTTTAAACTCGAAAGTAGAAAAATTTAAAAGTGTTAACCCACAAATC
GAATTTGAATATAAGGTCAATCGTGGATCACACCCATACTTAATAGCAACATATGAATCA
GGAGTAACAAAAACTGTACCATTAAGAGGTAGAACAGAAGAAAAAGTTTTAAAACATATT
CAAAATCTTAAAGATACTTCAGGTGAAAAACCAAGAAAGTTTGGTGATAGATATATTTCT
AAAACAGAATCAATTCAAGGATTGTGGAATCCATTCATTAATTTTAGTAACAGTGAACAA
TAAATATAAATAAATAAACAAACAGAA
Length of full length seq. 387