>FC-AR14 (FC-AR14Q) /CSM/FC/FC-AR/FC-AR14Q.Seq.d/
XXXXXXXXXXTTCCCAATCACAATCTGCTGGTTCAGATTCACAATCTGCTGGTTCAGAAT
CATCCCAATCTGAATCCGGTTCACAATCACAATCTGAATCCGGTTCACAATCACAATCAC
AATCTGGTTCTCAATCATTCTCTGGTTCCTTATACTCTGGTTCATACTCTGGTTCCCAAT
CTGGTTCCCAATCTGGTAACAGCGGTGCTGCTGTTAAACAAACTGGTGCTGGTTCAGGTT
CAGGTTCAGGTTCAGGTTCCGGTTCCGGTTCAGGTTCAGGTTCAGTCTCAGGTTCAGCTT
CAGGTTCCGCCTCAGGTTCCGCCTCAGGTTCATCAAGTGGTAGCAATAGCAACGGTGGTG
TTTATCCAACCGCTGGTGACTACTGGATCGTTAAAAACTCATGGGGTACCTCATGGGGTA
TGGATGGTTACATTTTAATGACCAAAGGAAATAACAATCAATGCGGTATTGCAACAATGG
CCTCACGTCCAACTGCTGTTGCATCACTTTAAATTAACGATACATATATATACATATTTA
TATAATTTTATAATTAATAAAAAATAATACGAAAACATATAAAATTTATATGATAAATAA
ATA

---SQSQSAGSDSQSAGSESSQSESGSQSQSESGSQSQSQSGSQSFSGSLYSGSYSGSQS
GSQSGNSGAAVKQTGAGSGSGSGSGSGSGSGSGSVSGSASGSASGSASGSSSGSNSNGGV
YPTAGDYWIVKNSWGTSWGMDGYILMTKGNNNQCGIATMASRPTAVASL*indtyiyifi
*fyn**kiirkhikfi**in

Frame A:
---SQSQSAGSDSQSAGSESSQSESGSQSQSESGSQSQSQSGSQSFSGSLYSGSYSGSQS
GSQSGNSGAAVKQTGAGSGSGSGSGSGSGSGSGSVSGSASGSASGSASGSSSGSNSNGGV
YPTAGDYWIVKNSWGTSWGMDGYILMTKGNNNQCGIATMASRPTAVASL*indtyiyifi
*fyn**kiirkhikfi**in


Frame B:
---pnhnllvqihnllvqnhpnlnpvhnhnlnpvhnhnhnlvlnhslvpytlvhtlvpnl
vpnlvtavlllnklvlvqvqvqvqvpvpvqvqvqsqvqlqvppqvppqvhqvvaiatvvf
iqplvttgslkthgvphgvwmvtf**pkeitinavlqqwphvqlllhhfkltihiytyly
nfiinkk*yeni*nlydk*i


Frame C:
---piticwfrfticwfriipi*irftiti*irftititiwfsiilwflilwfilwfpiw
fpiw*qrccc*tnwcwfrfrfrfrfrfrfrfrfslrfsfrfrlrfrlrfikw*q*qrwcl
snrw*lldr*klmgylmgygwlhfndqrk*qsmrycnngltsncccitln*ryiyihiyi
il*liknntktykiymink

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHJ755 (VHJ755Q) /CSM/VH/VHJ7-C/VHJ755Q.Seq.d/                        436   e-121
VHI101 (VHI101Q) /CSM/VH/VHI1-A/VHI101Q.Seq.d/                        436   e-121
VHB771 (VHB771Q) /CSM/VH/VHB7-C/VHB771Q.Seq.d/                        436   e-121
VHB683 (VHB683Q) /CSM/VH/VHB6-D/VHB683Q.Seq.d/                        436   e-121
VFO832 (VFO832Q) /CSM/VF/VFO8-B/VFO832Q.Seq.d/                        436   e-121
VFO544 (VFO544Q) /CSM/VF/VFO5-B/VFO544Q.Seq.d/                        436   e-121
VFN695 (VFN695Q) /CSM/VF/VFN6-D/VFN695Q.Seq.d/                        436   e-121
VFN591 (VFN591Q) /CSM/VF/VFN5-D/VFN591Q.Seq.d/                        436   e-121
VFN339 (VFN339Q) /CSM/VF/VFN3-B/VFN339Q.Seq.d/                        436   e-121
VFN322 (VFN322Q) /CSM/VF/VFN3-A/VFN322Q.Seq.d/                        436   e-121

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.   444  0.0  4
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.   117  4e-28  3
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    58  5e-18  5
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    92  3e-17  2
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    92  2e-14  3
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.    82  9e-12  1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.    72  8e-09  1
BP130435|BP130435.1 Nicotiana tabacum cDNA, clone: BY2401, primer: M13 forward, sequence 1.    44  0.007  2
X91645|X91645.1 E.histolytica DNA encoding for cysteine proteinase (1159 bp).    52  0.008  1
AZ537833|AZ537833.1 ENTGB94TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52  0.008  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94504) RecName: Full=Cysteine proteinase 7;          EC=3.4.22...   109   5e-23
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...    80   3e-14
(Q94503) RecName: Full=Cysteine proteinase 6;          EC=3.4.22...    79   7e-14
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...    72   9e-12
EU143709_1(EU143709|pid:none) Stichopus japonicus cathepsin L mR...    71   2e-11
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys...    70   3e-11
(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...    70   4e-11
AF098670_1(AF098670|pid:none) Tethya aurantia silicatein beta mR...    70   4e-11
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...    69   7e-11
AY277910_1(AY277910|pid:none) Branchiostoma belcheri tsingtaunes...    69   1e-10

 psg: 0.75  gvh: 0.45  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AR14 is cyt

>FC-AR14Z.Seq
----------TTCCCAATCACAATCTGCTGGTTCAGATTCACAATCTGCTGGTTCAGAAT
CATCCCAATCTGAATCCGGTTCACAATCACAATCTGAATCCGGTTCACAATCACAATCAC
AATCTGGTTCTCAATCATTCTCTGGTTCCTTATACTCTGGTTCATACTCTGGTTCCCAAT
CTGGTTCCCAATCTGGTAACAGCGGTGCTGCTGTTAAACAAACTGGTGCTGGTTCAGGTT
CAGGTTCAGGTTCAGGTTCCGGTTCCGGTTCAGGTTCAGGTTCAGTCTCAGGTTCAGCTT
CAGGTTCCGCCTCAGGTTCCGCCTCAGGTTCATCAAGTGGTAGCAATAGCAACGGTGGTG
TTTATCCAACCGCTGGTGACTACTGGATCGTTAAAAACTCATGGGGTACCTCATGGGGTA
TGGATGGTTACATTTTAATGACCAAAGGAAATAACAATCAATGCGGTATTGCAACAATGG
CCTCACGTCCAACTGCTGTTGCATCACTTTAAATTAACGATACATATATATACATATTTA
TATAATTTTATAATTAATAAAAAATAATACGAAAACATATAAAATTTATATGATAAATAA
ATA