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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AR12
Library FC
(Link to library)
Clone ID FC-AR12
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15450-1
Original site URL
Representative seq. ID FC-AR12E
(Link to Original site)
Representative DNA sequence 
>FC-AR12 (FC-AR12Q) /CSM/FC/FC-AR/FC-AR12Q.Seq.d/
CAAAATGTCTGCCAAAGCTGCCACCAAAAACGCTACTAAGGTTGCCGTCAAAGCACCAGA
AGCAACTACACCAGTTGAAACCAAAAAATCAAAGAAAGACAATGTCATGAGAGGTCTCAG
AATTGAAAAGTTAGTTCTCAACATTTGTGTTGGTGAATCTGGTGATAGATTAGTTCGTGC
TGCTAAAGTACTTGAACAATTAACTGGTCAAACCCCAGTCTACTCTAAAGCTCGTTACAC
TGTCAGATCTTTCAACATTCGTCGTAATGAACAAATCGCTGCTCACGTCACTGTCCGTGG
TGAAAAAGCTGCTGAAATCTTAGAAAAAGGTCTCAAAGTTAGAGAATTCGAACTCCGTGC
CCGTAACTTCTCAACCCAAGGTTCATTTGGTTTTGGTATCCAAGAACACATCGATTTAGG
TATTAAATACGATCCATCAATCGGTATTTACGGTATGGATTTCTTCGTCGTACTTTCACG
TCCAGGTTTCCGTGTTGCTCACAAAAAGAGAGCCGGTGCTAAAGTTGGTTTCCAACATAA
AATCGGTAAAGAAGATGCCGTTAACTGGTTCAAAACCACTTATGATGGTATTGTTATTGG
TGGAAAGAAATAAACAATTGTTCACACATAAATTATAAAAACT
sequence update 1997. 4. 9
Translated Amino Acid sequence 
KMSAKAATKNATKVAVKAPEATTPVETKKSKKDNVMRGLRIEKLVLNICVGESGDRLVRA
AKVLEQLTGQTPVYSKARYTVRSFNIRRNEQIAAHVTVRGEKAAEILEKGLKVREFELRA
RNFSTQGSFGFGIQEHIDLGIKYDPSIGIYGMDFFVVLSRPGFRVAHKKRAGAKVGFQHK
IGKEDAVNWFKTTYDGIVIGGKK*tivht*iikt
Translated Amino Acid sequence (All Frames) 
Frame A:
qnvcqschqkry*gcrqstrsnyts*nqkikerqchersqn*kvssqhlcw*iw**issc
c*st*tinwsnpsll*sslhcqifqhss**tnrcsrhcpw*ksc*nlrkrsqs*rirtpc
p*llnprfiwfwyprthrfry*irsinrylrygflrrtftsrfpccsqkesrc*swfpt*
nr*rrcr*lvqnhl*wycywwkeinncshinykn


Frame B:
KMSAKAATKNATKVAVKAPEATTPVETKKSKKDNVMRGLRIEKLVLNICVGESGDRLVRA
AKVLEQLTGQTPVYSKARYTVRSFNIRRNEQIAAHVTVRGEKAAEILEKGLKVREFELRA
RNFSTQGSFGFGIQEHIDLGIKYDPSIGIYGMDFFVVLSRPGFRVAHKKRAGAKVGFQHK
IGKEDAVNWFKTTYDGIVIGGKK*tivht*iikt


Frame C:
kclpklppktllrlpskhqkqlhqlkpknqrktms*evselks*fstfvlvnlvid*fvl
lkylnn*lvkpqstlklvtlsdlstfvvmnkslltslsvvkkllks*kkvsklensnsvp
vtsqpkvhlvlvskntsi*vlntihqsvftvwisssyfhvqvsvlltkrepvlklvsnik
svkkmpltgskplmmvlllvernkqlfthkl*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AR12 (FC-AR12Q) /CSM/FC/FC-AR/FC-AR12Q.Seq.d/                     1275   0.0
FC-AE20 (FC-AE20Q) /CSM/FC/FC-AE/FC-AE20Q.Seq.d/                     1269   0.0
FC-AG19 (FC-AG19Q) /CSM/FC/FC-AG/FC-AG19Q.Seq.d/                     1267   0.0
VHC468 (VHC468Q) /CSM/VH/VHC4-C/VHC468Q.Seq.d/                       1247   0.0
FC-BL21 (FC-BL21Q) /CSM/FC/FC-BL/FC-BL21Q.Seq.d/                     1203   0.0
VHH863 (VHH863Q) /CSM/VH/VHH8-C/VHH863Q.Seq.d/                       1199   0.0
VFF502 (VFF502Q) /CSM/VF/VFF5-A/VFF502Q.Seq.d/                       1183   0.0
VFA578 (VFA578Q) /CSM/VF/VFA5-D/VFA578Q.Seq.d/                        977   0.0
VSG602 (VSG602Q) /CSM/VS/VSG6-A/VSG602Q.Seq.d/                        595   e-169
FC-IC1530 (FC-IC1530Q) /CSM/FC-IC/FC-IC1530Q.Seq.d/                   543   e-153
own update 2002.11.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X15382|X15382.1 D.discoideum vegetative specific gene V18 gene for ribosomal  protein.   444   e-176  2
AX073244|AX073244.1 Sequence 355 from Patent WO0102550.            78   5e-37  4
AL423295|AL423295.1 T7 end of clone AZ0AA007E12 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus.    86   6e-33  4
AL423296|AL423296.1 T3 end of clone AZ0AA007E12 of library AZ0AA from strain CBS 712 of Kluyveromyces marxianus.    86   7e-33  4
BI512306|BI512306.1 BB160008B20A06 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160008B20A06 5', mRNA sequence.    66   9e-27  4
BI505034|BI505034.1 BB170010B20C07 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170010B20C07 5', mRNA sequence.    66   2e-26  4
BI745153|BI745153.1 rk96g12.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5' similar to SW:RL11_HUMAN P39026 60S RIBOSOMAL PROTEIN L11. [1] ;, mRNA sequence.    82   3e-25  2
BE492917|BE492917.1 WHE0566_F09_F09ZR Triticum monococcum shoot apex cDNA library Triticum monococcum cDNA clone WHE0566_F09_F09, mRNA sequence.    84   8e-22  2
BE492135|BE492135.1 WHE0555_A08_A08ZR Triticum monococcum shoot apex cDNA library Triticum monococcum cDNA clone WHE0555_A08_A08, mRNA sequence.    84   8e-22  2
BQ427221|BQ427221.1 CgHem 027-J-09 C. gigas Hemocytes Lambda Zap Express Library Crassostrea gigas cDNA, mRNA sequence.    46   8e-22  6
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P16168) RecName: Full=60S ribosomal protein L11; AltName: Full=...   365   e-100
AM049026_1(AM049026|pid:none) Curculio glandium mRNA for ribosom...   268   1e-70
AB374946_1(AB374946|pid:none) Solea senegalensis RPL11 mRNA for ...   266   4e-70
BC135522_1(BC135522|pid:none) Xenopus tropicalis hypothetical pr...   266   4e-70
EU144049_1(EU144049|pid:none) Perca flavescens ribosomal protein...   266   4e-70
BC078513_1(BC078513|pid:none) Xenopus laevis MGC85310 protein, m...   265   7e-70
EF639091_1(EF639091|pid:none) Triatoma infestans clone tin-445 r...   265   9e-70
AK340094_1(AK340094|pid:none) Acyrthosiphon pisum ACYPI008302 mR...   265   1e-69
AK339843_1(AK339843|pid:none) Acyrthosiphon pisum ACYPI004755 mR...   265   1e-69
(Q90YV7) RecName: Full=60S ribosomal protein L11;  &AF401565_1(A...   264   1e-69
protein update 2009. 7. 2
PSORT 

 psg: 0.62  gvh: 0.40  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: cytoplasmic
	 20.0 %: mitochondrial

>> prediction for FC-AR12 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AR12E
Full length Seq. 
>FC-AR12E.Seq
CAAAATGTCTGCCAAAGCTGCCACCAAAAACGCTACTAAGGTTGCCGTCAAAGCACCAGA
AGCAACTACACCAGTTGAAACCAAAAAATCAAAGAAAGACAATGTCATGAGAGGTCTCAG
AATTGAAAAGTTAGTTCTCAACATTTGTGTTGGTGAATCTGGTGATAGATTAGTTCGTGC
TGCTAAAGTACTTGAACAATTAACTGGTCAAACCCCAGTCTACTCTAAAGCTCGTTACAC
TGTCAGATCTTTCAACATTCGTCGTAATGAACAAATCGCTGCTCACGTCACTGTCCGTGG
TGAAAAAGCTGCTGAAATCTTAGAAAAAGGTCTCAAAGTTAGAGAATTCGAACTCCGTGC
CCGTAACTTCTCAACCCAAGGTTCATTTGGTTTTGGTATCCAAGAACACATCGATTTAGG
TATTAAATACGATCCATCAATCGGTATTTACGGTATGGATTTCTTCGTCGTACTTTCACG
TCCAGGTTTCCGTGTTGCTCACAAAAAGAGAGCCGGTGCTAAAGTTGGTTTCCAACATAA
AATCGGTAAAGAAGATGCCGTTAACTGGTTCAAAACCACTTATGATGGTATTGTTATTGG
TGGAAAGAAATAAACAATTGTTCACACATAAATTATAAAAACT
Length of full length seq. 643