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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AR11
Library FC
(Link to library)
Clone ID FC-AR11
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14938-1
Original site URL
Representative seq. ID FC-AR11E
(Link to Original site)
Representative DNA sequence 
>FC-AR11 (FC-AR11Q) /CSM/FC/FC-AR/FC-AR11Q.Seq.d/
TGCCAATGTTGAAACTGATTGTCAAATTAAGAGCTTGGAAGTAAACAGCCAAGACAATAA
TTTGATAGCAATGGGTGGTATCAATGGTAATGTCTACGTTTATTCACGTGAAACCAATGA
ACTTTGTACAGCTATTAAAGGAACAAGTTCTGCACCAATAAATAAAGTATTGTTTGCTCC
AAACAATACCATAGTTTCAGCAGGCTCCGATGCAGTGATCAGAGTTGTAAAAGGTGGTGA
AAGTCCATCTAAAAAGACCTACACTCAATATAAATCCACTTATCAATTCGCCCATAAAGC
TAGTGTCACCGATATATCGTTACATGTATTGGGAGATTATATAATTTCATCTTCACTCGA
TAAATCATTGAATATGTACGATATTGTCAATGGAACTCATTTGACTAGCTTTGGTCAATC
TCAACAACTTTGTTACACTAGTGTCGCCTTCCACCCAGATGGTATGTTTTTCGCAGCCGG
TACTCAAAATGGTGTGGTCAAAATCTTTGATCTCAAGAGTAAAGTAAACAGTTTCAACTT
TCAAGGTCTTTCAACCGCTGTCAATTGTATCTCCTTCTCTGAGAATGGTTACTATTTAAC
CGCAGCCGATAATAACACTGTGAAATTATTTGATCTTCGTAAAGCTGCCACTAAAAACTC
ACCAGATATTCAAACCATCACTTTGGATAATCAACAAATTAAATCTATCAATTTCGATTA
CTCTAGCCAATATCTTGGTGTAGCATCTTCCAATCAAATCAATCTTTACAGTTGCAAATC
AAAACAAAAACCACCAATCTCTTCTATTCATTCAATTGATTCAGATTGTTTAGACTTTAA
ATGGGCAAGACCAAATTCAAATTTCTTTGTAACTTCTTCCTCTTCTAAAAATATTGTCAA
TATCTTTTCCAACTAAAA
sequence update 1997. 4.15
Translated Amino Acid sequence 
ANVETDCQIKSLEVNSQDNNLIAMGGINGNVYVYSRETNELCTAIKGTSSAPINKVLFAP
NNTIVSAGSDAVIRVVKGGESPSKKTYTQYKSTYQFAHKASVTDISLHVLGDYIISSSLD
KSLNMYDIVNGTHLTSFGQSQQLCYTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNF
QGLSTAVNCISFSENGYYLTAADNNTVKLFDLRKAATKNSPDIQTITLDNQQIKSINFDY
SSQYLGVASSNQINLYSCKSKQKPPISSIHSIDSDCLDFKWARPNSNFFVTSSSSKNIVN
IFSN*
Translated Amino Acid sequence (All Frames) 
Frame A:
cqc*n*lsn*elgskqprq*fdsngwyqw*clrlft*nq*tlysy*rnkfctnk*sivcs
kqyhsfsrlrcsdqsckrw*ksi*kdlhsi*ihlsirp*s*chryivtcigrlynfiftr
*iieyvrycqwnsfd*lwsisttllh*crlpprwyvfrsryskwcgqnl*sqe*skqfql
srsfnrcqlylll*ewllfnrsr**hceii*ss*sch*kltrysnhhfg*stn*iyqfrl
l*piswcsifqsnqslqlqiktkttnlfysfn*frlfrl*mgktkfkflcnfflf*kycq
ylfqlk


Frame B:
ANVETDCQIKSLEVNSQDNNLIAMGGINGNVYVYSRETNELCTAIKGTSSAPINKVLFAP
NNTIVSAGSDAVIRVVKGGESPSKKTYTQYKSTYQFAHKASVTDISLHVLGDYIISSSLD
KSLNMYDIVNGTHLTSFGQSQQLCYTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNF
QGLSTAVNCISFSENGYYLTAADNNTVKLFDLRKAATKNSPDIQTITLDNQQIKSINFDY
SSQYLGVASSNQINLYSCKSKQKPPISSIHSIDSDCLDFKWARPNSNFFVTSSSSKNIVN
IFSN*


Frame C:
pmlklivklrawk*taktii**qwvvsmvmstfihvkpmnfvqllkeqvlhq*ikycllq
tip*fqqapmq*sel*kvvkvhlkrptlninplinspiklvspiyrymyweii*fhlhsi
nh*ictilsmeli*lalvnlnnfvtlvspstqmvcfsqpvlkmvwskslisrvk*tvstf
kvfqplsivspslrmvti*pqpiitl*nylifvklplkthqifkpslwiinklnlsisit
lanilv*hlpiksiftvanqnknhqsllfiqliqiv*tlngqdqiqisl*llpllkilsi
sfptk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AR11 (FC-AR11Q) /CSM/FC/FC-AR/FC-AR11Q.Seq.d/                     1820   0.0
VFI741 (VFI741Q) /CSM/VF/VFI7-B/VFI741Q.Seq.d/                       1495   0.0
AFN532 (AFN532Q) /CSM/AF/AFN5-B/AFN532Q.Seq.d/                       1495   0.0
SFD267 (SFD267Q) /CSM/SF/SFD2-C/SFD267Q.Seq.d/                       1485   0.0
CFC701 (CFC701Q) /CSM/CF/CFC7-A/CFC701Q.Seq.d/                       1483   0.0
SFE587 (SFE587Q) /CSM/SF/SFE5-D/SFE587Q.Seq.d/                       1475   0.0
AFO314 (AFO314Q) /CSM/AF/AFO3-A/AFO314Q.Seq.d/                       1461   0.0
CFJ255 (CFJ255Q) /CSM/CF/CFJ2-C/CFJ255Q.Seq.d/                       1435   0.0
VFE320 (VFE320Q) /CSM/VF/VFE3-A/VFE320Q.Seq.d/                       1433   0.0
AFH587 (AFH587Q) /CSM/AF/AFH5-D/AFH587Q.Seq.d/                       1425   0.0
own update 2001.11.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.  1820   0.0    1
BU043992|BU043992.1 PP_LEa0017N15f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0017N15f, mRNA sequence.    50   0.054  1
AC131792|AC131792.4 Mus musculus BAC clone RP24-468O15 from chromosome 19, complete sequence.    36   0.081  7
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34   0.15   9
AC111217|AC111217.4 Rattus norvegicus clone CH230-62D9, WORKING DRAFT SEQUENCE, 2 unordered pieces.    48   0.21   1
AL672222|AL672222.11 Mouse DNA sequence from clone RP23-330A15 on chromosome X.    32   0.26   9
AC102092|AC102092.7 Mus musculus chromosome 3, clone RP23-20B1, complete sequence.    36   0.44   7
AC117815|AC117815.3 Mus musculus clone RP24-572H8, WORKING DRAFT SEQUENCE, 2 ordered pieces.    30   0.66   10
AC146633|AC146633.1 Mus musculus chromosome UNK clone RP24-483C21, WORKING DRAFT SEQUENCE, 7 unordered pieces.    38   0.73   6
L07143|L07143.1 Caenorhabditis elegans cosmid B0523.    38   0.83   2
dna update 2003.12.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7KWK5) RecName: Full=Pre-mRNA-processing factor 19 homolog; Al...   583   e-165
AE013599_2870(AE013599|pid:none) Drosophila melanogaster chromos...   157   4e-37
AK342167_1(AK342167|pid:none) Acyrthosiphon pisum ACYPI005525 mR...   157   6e-37
BC045954_1(BC045954|pid:none) Danio rerio PRP19/PSO4 homolog (S....   154   4e-36
BT080589_1(BT080589|pid:none) Caligus clemensi clone ccle-evs-50...   154   5e-36
AK076998_1(AK076998|pid:none) Mus musculus adult male testis cDN...   152   1e-35
AB222602_1(AB222602|pid:none) Mus musculus prp19 beta mRNA, comp...   152   1e-35
BT059738_1(BT059738|pid:none) Salmo salar clone ssal-rgf-521-021...   151   3e-35
EU417752_1(EU417752|pid:none) Sus scrofa pre-mRNA processing fac...   151   3e-35
(Q08E38) RecName: Full=Pre-mRNA-processing factor 19; AltName: F...   151   3e-35
protein update 2009. 7. 2
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AR11 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID FC-AR11E
Full length Seq. 
>FC-AR11E.Seq
TGCCAATGTTGAAACTGATTGTCAAATTAAGAGCTTGGAAGTAAACAGCCAAGACAATAA
TTTGATAGCAATGGGTGGTATCAATGGTAATGTCTACGTTTATTCACGTGAAACCAATGA
ACTTTGTACAGCTATTAAAGGAACAAGTTCTGCACCAATAAATAAAGTATTGTTTGCTCC
AAACAATACCATAGTTTCAGCAGGCTCCGATGCAGTGATCAGAGTTGTAAAAGGTGGTGA
AAGTCCATCTAAAAAGACCTACACTCAATATAAATCCACTTATCAATTCGCCCATAAAGC
TAGTGTCACCGATATATCGTTACATGTATTGGGAGATTATATAATTTCATCTTCACTCGA
TAAATCATTGAATATGTACGATATTGTCAATGGAACTCATTTGACTAGCTTTGGTCAATC
TCAACAACTTTGTTACACTAGTGTCGCCTTCCACCCAGATGGTATGTTTTTCGCAGCCGG
TACTCAAAATGGTGTGGTCAAAATCTTTGATCTCAAGAGTAAAGTAAACAGTTTCAACTT
TCAAGGTCTTTCAACCGCTGTCAATTGTATCTCCTTCTCTGAGAATGGTTACTATTTAAC
CGCAGCCGATAATAACACTGTGAAATTATTTGATCTTCGTAAAGCTGCCACTAAAAACTC
ACCAGATATTCAAACCATCACTTTGGATAATCAACAAATTAAATCTATCAATTTCGATTA
CTCTAGCCAATATCTTGGTGTAGCATCTTCCAATCAAATCAATCTTTACAGTTGCAAATC
AAAACAAAAACCACCAATCTCTTCTATTCATTCAATTGATTCAGATTGTTTAGACTTTAA
ATGGGCAAGACCAAATTCAAATTTCTTTGTAACTTCTTCCTCTTCTAAAAATATTGTCAA
TATCTTTTCCAACTAAAA
Length of full length seq. 918