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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AR10
Library FC
(Link to library)
Clone ID FC-AR10
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15065-1
Original site URL
Representative seq. ID FC-AR10P
(Link to Original site)
Representative DNA sequence 
>FC-AR10 (FC-AR10Q) /CSM/FC/FC-AR/FC-AR10Q.Seq.d/
CGGACGCGTGGAAAATGTTTAATACAAATACATCTAACATTTCAACAAATGTATATGGTT
TATCACAAAAGACAAGAGCATTATCACATATTACAGCGGAAGCAGATGTAAACCGATTTT
TAGTTGGAACAACAGCATTAAGAGAAGAGAATGAAATTGCATTATTAGAAGCCAAAGAAG
GTGAAGGTGTTAGATGTTTATCAATATTTCCACACCCAAAAGAAATCCATTCAATAACGT
CATGTCCATTTGATTCATCATTATTCTTTTCAGTATATAATACATCAGGTGGTGGTAATA
ATAATAGTAATAATACAAATAACAATGATAATACAAATAACAATACAAATAATAATGATT
TTAAATCATCATTATGGAGAATTAATGAATCTATGGATTCAATTGAAGAATTATTTGXXX
XXXXXXXATCATTGGATTTGGTCTGCTAAATTTAATAGATATCATGATCAATTAATCATT
ACTTCAAGTAGTGATAACACTGTAAAATTATGGAACCTTTATTCTTTATCTTCTGCTTTC
AATAGTGAAAATAATATTAGTAATAGTAATGAACAACAACACTCACAACAACCAAATGAA
CAACAACCACAACAACCACCACAACCAGTTAAACAAAAGAAAAATAAAAGAAATGAAGAT
CAATTAATTAAAACTTATGAAGAACATGAAGATAGTGTTTATAATATATCATGGAGTTCA
AGTAATTTCTTATTTGCATCTTTATCTTATGATGGTAGATTTGTTGTTAATAATGTACCA
AAAGAATATTCCGATATTTTATCTTATATTTGAAAATAAAAAAAATAAAAATAAAAACCA
ATATAAATATAAATATAAATTAAAA
sequence update 1997. 4.15
Translated Amino Acid sequence 
DAWKMFNTNTSNISTNVYGLSQKTRALSHITAEADVNRFLVGTTALREENEIALLEAKEG
EGVRCLSIFPHPKEIHSITSCPFDSSLFFSVYNTSGGGNNNSNNTNNNDNTNNNTNNNDF
KSSLWRINESMDSIEELF---

---HWIWSAKFNRYHDQLIITSSSDNTVKLWNLYSLSSAFNSENNISNSNEQQHSQQPNE
QQPQQPPQPVKQKKNKRNEDQLIKTYEEHEDSVYNISWSSSNFLFASLSYDGRFVVNNVP
KEYSDILSYI*k*kk*k*kpi*i*i*ik
Translated Amino Acid sequence (All Frames) 
Frame A:
rtrgkcliqihltfqqmymvyhkrqehyhilqrkqm*tdf*leqqh*ekrmklhy*kpkk
vkvldvyqyfhtqkksiq*rhvhlihhysfqyiihqvvviiiviiqitmiiqitiqiimi
lnhhygelmnlwiqlknyl---

---iigfgllnlidimin*sllqvvitl*nygtfilylllsivkiilvivmnnnthnnqm
nnnhnnhhnqlnkrkikemkin*lklmknmkivfiiyhgvqvisylhlylmmvdlllimy
qknipifylifenkknknknqykykyklk

Frame B:
grvenv*ykyi*hfnkciwfitkdksiityysgsrckpifswnnsikrre*nciirsqrr
*rc*mfinistpkrnpfnnvmsi*fiiilfsi*yirww******yk*q**yk*qyk***f
*iiimen**iygfn*rii---

---sldlvc*i**is*sinhyfk***hckimeplffifcfq**k*y*****tttltttk*
ttttttttts*tkek*kk*rsin*nl*rt*r*cl*yimefk*flicifil*w*icc**ct
krifryfilylkikkikiktnininin*

Frame C:
DAWKMFNTNTSNISTNVYGLSQKTRALSHITAEADVNRFLVGTTALREENEIALLEAKEG
EGVRCLSIFPHPKEIHSITSCPFDSSLFFSVYNTSGGGNNNSNNTNNNDNTNNNTNNNDF
KSSLWRINESMDSIEELF---

---HWIWSAKFNRYHDQLIITSSSDNTVKLWNLYSLSSAFNSENNISNSNEQQHSQQPNE
QQPQQPPQPVKQKKNKRNEDQLIKTYEEHEDSVYNISWSSSNFLFASLSYDGRFVVNNVP
KEYSDILSYI*k*kk*k*kpi*i*i*ik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AR10 (FC-AR10Q) /CSM/FC/FC-AR/FC-AR10Q.Seq.d/                      585   e-166
SFJ678 (SFJ678Q) /CSM/SF/SFJ6-D/SFJ678Q.Seq.d/                        563   e-159
CFI635 (CFI635Q) /CSM/CF/CFI6-B/CFI635Q.Seq.d/                        563   e-159
VFM744 (VFM744Q) /CSM/VF/VFM7-B/VFM744Q.Seq.d/                        216   4e-55
SFF732 (SFF732Q) /CSM/SF/SFF7-B/SFF732Q.Seq.d/                         40   0.055
VFG444 (VFG444Q) /CSM/VF/VFG4-B/VFG444Q.Seq.d/                         38   0.22
SSG517 (SSG517Q) /CSM/SS/SSG5-A/SSG517Q.Seq.d/                         38   0.22
VSJ823 (VSJ823Q) /CSM/VS/VSJ8-A/VSJ823Q.Seq.d/                         36   0.86
VSI640 (VSI640Q) /CSM/VS/VSI6-B/VSI640Q.Seq.d/                         36   0.86
VSH135 (VSH135Q) /CSM/VS/VSH1-B/VSH135Q.Seq.d/                         36   0.86
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   555  0.0  4
AC115952|AC115952.4 Mus musculus clone RP24-573K10, WORKING DRAFT SEQUENCE, 3 ordered pieces.    48  0.003  4
AB102780|AB102780.1 Dictyostelium discoideum K4 mRNA for kinesin-related protein K4, complete cds.    48  0.022  3
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    38  0.038  10
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          42  0.11  12
AL937866|AL937866.1 Arabidopsis thaliana T-DNA flanking sequence GK-089F12-016187.    48  0.18  1
AC006922|AC006922.7 Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete sequence.    48  0.18  1
AZ816117|AZ816117.1 2M0084P12R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC2M0084P12 R, DNA sequence.    48  0.18  1
AL937865|AL937865.1 Arabidopsis thaliana T-DNA flanking sequence GK-089F12-016186.    48  0.18  1
BY736670|BY736670.1 Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0045D09, 5' end partial sequence.    48  0.18  1
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q3KPT3) RecName: Full=Protein TSSC1;  &BC106571_1(BC106571|pid:...    88   3e-16
(Q5M8I4) RecName: Full=Protein TSSC1;  &BC088009_1(BC088009|pid:...    88   3e-16
BC105207_1(BC105207|pid:none) Bos taurus tumor suppressing subtr...    87   5e-16
(Q5PPK9) RecName: Full=Protein TSSC1;  &BC087633_1(BC087633|pid:...    87   7e-16
(Q8K0G5) RecName: Full=Protein TSSC1;  &BC031458_1(BC031458|pid:...    87   7e-16
AC019118_1(AC019118|pid:none) Homo sapiens BAC clone RP11-513H7 ...    87   7e-16
(Q4R571) RecName: Full=Protein TSSC1;  &AB169673_1(AB169673|pid:...    87   7e-16
AM910996_379(AM910996|pid:none) Plasmodium knowlesi strain H chr...    72   2e-11
AC069251_2(AC069251|pid:none) Genomic sequence for Arabidopsis t...    69   1e-10
AY093157_1(AY093157|pid:none) Arabidopsis thaliana unknown prote...    69   1e-10
protein update 2009. 4.13
PSORT 

 psg: 0.81  gvh: 0.47  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.05
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AR10 is nuc
5' end seq. ID FC-AR10F
5' end seq. 
>FC-AR10F.Seq
CGGACGCGTGGAAAATGTTTAATACAAATACATCTAACATTTCAACAAATGTATATGGTT
TATCACAAAAGACAAGAGCATTATCACATATTACAGCGGAAGCAGATGTAAACCGATTTT
TAGTTGGAACAACAGCATTAAGAGAAGAGAATGAAATTGCATTATTAGAAGCCAAAGAAG
GTGAAGGTGTTAGATGTTTATCAATATTTCCACACCCAAAAGAAATCCATTCAATAACGT
CATGTCCATTTGATTCATCATTATTCTTTTCAGTATATAATACATCAGGTGGTGGTAATA
ATAATAGTAATAATACAAATAACAATGATAATACAAATAACAATACAAATAATAATGATT
TTAAATCATCATTATGGAGAATTAATGAATCTATGGATTCAATTGAAGAATTATTTG---
-------
Length of 5' end seq. 417
3' end seq. ID FC-AR10Z
3' end seq. 
>FC-AR10Z.Seq
----------ATCATTGGATTTGGTCTGCTAAATTTAATAGATATCATGATCAATTAATC
ATTACTTCAAGTAGTGATAACACTGTAAAATTATGGAACCTTTATTCTTTATCTTCTGCT
TTCAATAGTGAAAATAATATTAGTAATAGTAATGAACAACAACACTCACAACAACCAAAT
GAACAACAACCACAACAACCACCACAACCAGTTAAACAAAAGAAAAATAAAAGAAATGAA
GATCAATTAATTAAAACTTATGAAGAACATGAAGATAGTGTTTATAATATATCATGGAGT
TCAAGTAATTTCTTATTTGCATCTTTATCTTATGATGGTAGATTTGTTGTTAATAATGTA
CCAAAAGAATATTCCGATATTTTATCTTATATTTGAAAATAAAAAAAATAAAAATAAAAA
CCAATATAAATATAAATATAAATTAAAA
Length of 3' end seq. 438
Connected seq. ID FC-AR10P
Connected seq. 
>FC-AR10P.Seq
CGGACGCGTGGAAAATGTTTAATACAAATACATCTAACATTTCAACAAATGTATATGGTT
TATCACAAAAGACAAGAGCATTATCACATATTACAGCGGAAGCAGATGTAAACCGATTTT
TAGTTGGAACAACAGCATTAAGAGAAGAGAATGAAATTGCATTATTAGAAGCCAAAGAAG
GTGAAGGTGTTAGATGTTTATCAATATTTCCACACCCAAAAGAAATCCATTCAATAACGT
CATGTCCATTTGATTCATCATTATTCTTTTCAGTATATAATACATCAGGTGGTGGTAATA
ATAATAGTAATAATACAAATAACAATGATAATACAAATAACAATACAAATAATAATGATT
TTAAATCATCATTATGGAGAATTAATGAATCTATGGATTCAATTGAAGAATTATTTG---
-------ATCATTGGATTTGGTCTGCTAAATTTAATAGATATCATGATCAATTAATCATT
ACTTCAAGTAGTGATAACACTGTAAAATTATGGAACCTTTATTCTTTATCTTCTGCTTTC
AATAGTGAAAATAATATTAGTAATAGTAATGAACAACAACACTCACAACAACCAAATGAA
CAACAACCACAACAACCACCACAACCAGTTAAACAAAAGAAAAATAAAAGAAATGAAGAT
CAATTAATTAAAACTTATGAAGAACATGAAGATAGTGTTTATAATATATCATGGAGTTCA
AGTAATTTCTTATTTGCATCTTTATCTTATGATGGTAGATTTGTTGTTAATAATGTACCA
AAAGAATATTCCGATATTTTATCTTATATTTGAAAATAAAAAAAATAAAAATAAAAACCA
ATATAAATATAAATATAAATTAAAA
Length of connected seq. 855
Full length Seq ID -
Full length Seq. -
Length of full length seq. -