>FC-AR09 (FC-AR09Q) /CSM/FC/FC-AR/FC-AR09Q.Seq.d/
CAAATATAAATACAATGACAACACAAGTTCCAAAAATTAAATGGGCAGAAAGACCAGACT
TTGTTTATATTACAATTGAAGCAGATGTTGAATCTCCAGTTGTTAAATTCGAATCAAACA
AAATTTCATTCGAAGGTAAAGGTAAAGATGGTAAACAATACGCCTTTTCCTATGATTTAT
TCAAAGAAATCGATGCTGATAAATCATCAACTGATTTCAAAACAAGCAGATACCCAAGAT
TAAAATTAGTTAAAAAAGATGCCGGTCCATATTGGAACTTTTTATTAAAAGATAAAAAGA
AAGACAAGTTTGTTGAAACCGATTGGACTCTTTGGAAGGATGAAGATGAAGTAGAAGAAA
ATGAAGATGCTGGTAAATTCGGTAACTTTGATATGGGTGGCATGGATATGCAACAAATGA
TGCAAGGTATGGGTGGTATGGGAGGTATGGGTGGTATGGGAGGTATGGGTGGTATGGGAG
GTATGGGAGGCATGGGAGGTATGCCAGATGGTATGAATTTCGATGATATGGATGATATGG
AAGATTTAGAAGACAAAGAAGAAGAAGGTGACAAAAAGAATACCGAAGAAACTGAAGAAA
CTAAATTAAACTCTGTTGATTAAATAAATAGTAATAACACATATTTATATTCCCACTTTA
TCCCCCAAAATTTAAAAAATAAAATAAAAATTAAAATAATAG

NINTMTTQVPKIKWAERPDFVYITIEADVESPVVKFESNKISFEGKGKDGKQYAFSYDLF
KEIDADKSSTDFKTSRYPRLKLVKKDAGPYWNFLLKDKKKDKFVETDWTLWKDEDEVEEN
EDAGKFGNFDMGGMDMQQMMQGMGGMGGMGGMGGMGGMGGMGGMGGMPDGMNFDDMDDME
DLEDKEEEGDKKNTEETEETKLNSVD*insnntylyshfipqnlknkikikii

Frame A:
qi*iq*qhkfqklngqkdqtlfilqlkqmlnlqllnsnqtkfhskvkvkmvnntpfpmiy
skksmlinhqliskqadtqd*n*lkkmpvhigtfy*kikrktsllkpiglfgrmkmk*kk
mkmlvnsvtliwvawicnk*ckvwvvwevwvvwevwvvwevweawevcqmv*ismiwmiw
ki*ktkkkkvtkripkklkkln*tllik*ivithiyiptlspki*kik*klk**


Frame B:
kykyndntsskn*mgrktrlclyyn*src*issc*irikqnfirr*r*rw*tirlfl*fi
qrnrc**iin*fqnkqipkikis*krcrsilelfikr*kerqvc*nrldsleg*r*srrk
*rcw*ir*l*ygwhgyatndarygwygrygwygrygwygrygrhgryarwyefr*yg*yg
rfrrqrrrr*qkeyrrn*rn*iklc*lnk***hififplyppkfkk*nkn*nn


Frame C:
NINTMTTQVPKIKWAERPDFVYITIEADVESPVVKFESNKISFEGKGKDGKQYAFSYDLF
KEIDADKSSTDFKTSRYPRLKLVKKDAGPYWNFLLKDKKKDKFVETDWTLWKDEDEVEEN
EDAGKFGNFDMGGMDMQQMMQGMGGMGGMGGMGGMGGMGGMGGMGGMPDGMNFDDMDDME
DLEDKEEEGDKKNTEETEETKLNSVD*insnntylyshfipqnlknkikikii

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI768 (VSI768Q) /CSM/VS/VSI7-C/VSI768Q.Seq.d/                        841   0.0
VHC747 (VHC747Q) /CSM/VH/VHC7-B/VHC747Q.Seq.d/                        841   0.0
FC-AR09 (FC-AR09Q) /CSM/FC/FC-AR/FC-AR09Q.Seq.d/                      841   0.0
VSC280 (VSC280Q) /CSM/VS/VSC2-D/VSC280Q.Seq.d/                        835   0.0
VSI246 (VSI246Q) /CSM/VS/VSI2-B/VSI246Q.Seq.d/                        829   0.0
VSI632 (VSI632Q) /CSM/VS/VSI6-B/VSI632Q.Seq.d/                        827   0.0
SSB806 (SSB806Q) /CSM/SS/SSB8-A/SSB806Q.Seq.d/                        819   0.0
VSF133 (VSF133Q) /CSM/VS/VSF1-B/VSF133Q.Seq.d/                        817   0.0
VFG842 (VFG842Q) /CSM/VF/VFG8-B/VFG842Q.Seq.d/                        813   0.0
VSF124 (VSF124Q) /CSM/VS/VSF1-A/VSF124Q.Seq.d/                        795   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence.    46   2e-05  5
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   5e-05  15
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           44   9e-04  17
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    32   0.003  10
AL031746|AL031746.9 Plasmodium falciparum DNA from MAL1P3.         48   0.004  6
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36   0.004  11
AC135317|AC135317.6 Medicago truncatula clone mth2-10p4, WORKING DRAFT SEQUENCE, 5 ordered pieces.    36   0.014  9
BM036610|BM036610.1 fu80a11.y1 Gong zebrafish testis Danio rerio cDNA clone 5377076 5', mRNA sequence.    30   0.021  4
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    32   0.023  9
BQ074310|BQ074310.1 fz27e11.y1 Gong zebrafish testis Danio rerio cDNA 5', mRNA sequence.    30   0.029  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY279517_1(AY279517|pid:none) Branchiostoma belcheri tsingtaunes...    67   7e-10
(Q23280) RecName: Full=Uncharacterized protein ZC395.10;  &T2754...    65   3e-09
AM270325_29(AM270325|pid:none) Aspergillus niger contig An14c018...    61   3e-08
CR382123_618(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    59   1e-07
CR380957_492(CR380957|pid:none) Candida glabrata strain CBS138 c...    58   3e-07
AM494971_445(AM494971|pid:none) Leishmania braziliensis chromoso...    57   4e-07
(Q11118) RecName: Full=Protein wos2; AltName: Full=p21;  &CU3296...    57   5e-07
AB206399_1(AB206399|pid:none) Bombyx mori mRNA for p23-like prot...    57   5e-07
AP007166_496(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    56   9e-07
(Q9VH95) RecName: Full=Uncharacterized protein CG16817;  &AE0142...    56   1e-06

 psg: 0.42  gvh: 0.22  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for FC-AR09 is nuc

>FC-AR09E.Seq
CAAATATAAATACAATGACAACACAAGTTCCAAAAATTAAATGGGCAGAAAGACCAGACT
TTGTTTATATTACAATTGAAGCAGATGTTGAATCTCCAGTTGTTAAATTCGAATCAAACA
AAATTTCATTCGAAGGTAAAGGTAAAGATGGTAAACAATACGCCTTTTCCTATGATTTAT
TCAAAGAAATCGATGCTGATAAATCATCAACTGATTTCAAAACAAGCAGATACCCAAGAT
TAAAATTAGTTAAAAAAGATGCCGGTCCATATTGGAACTTTTTATTAAAAGATAAAAAGA
AAGACAAGTTTGTTGAAACCGATTGGACTCTTTGGAAGGATGAAGATGAAGTAGAAGAAA
ATGAAGATGCTGGTAAATTCGGTAACTTTGATATGGGTGGCATGGATATGCAACAAATGA
TGCAAGGTATGGGTGGTATGGGAGGTATGGGTGGTATGGGAGGTATGGGTGGTATGGGAG
GTATGGGAGGCATGGGAGGTATGCCAGATGGTATGAATTTCGATGATATGGATGATATGG
AAGATTTAGAAGACAAAGAAGAAGAAGGTGACAAAAAGAATACCGAAGAAACTGAAGAAA
CTAAATTAAACTCTGTTGATTAAATAAATAGTAATAACACATATTTATATTCCCACTTTA
TCCCCCAAAATTTAAAAAATAAAATAAAAATTAAAATAATAG