>FC-AR08 (FC-AR08Q) /CSM/FC/FC-AR/FC-AR08Q.Seq.d/
XXXXXXXXXXCTCTACAATCTACAAGAGAGACGGTTTAATCGGTTATATACCGTGGTTTT
GGTGAATCTGTCGGAGGTATCTTTGTCTACAGAGCAGCTTTCTTGGTGGTTACGATACGC
TAAAGGAATTTTATTAGGTGAAAACAACAAGAAAGCTTCATTCTGGGCTTCATGGGGTAT
CGCACAAGTTGTCGCTACAATCGTTGGAGTAGTCAGCTACCCATTCGATACTGTTCGTAG
AAGAATGATGATGCAAGCCGGTCGTGCTGATATTCTTTATTCAAGCACTTGGGATTGTTG
GGTAAAGATTGCCACCCGTGAAGGTCCAACTGCCTTCTTCAAAGGTGCTTTATCAAATGC
CATCAGAGGTTCAGGTGGTGCTTTAGTTTTAGTTATTTATGATGAAATCCAAAAACTTAT
GGGTTTTGAAGGTGGTGTTGGTTCTGAATAAGAAAATCCGCAAGAAAAAAAACAGGATTT
TAACTAAAAAAAAAAACATACATGAAATATAAAATAAAACTTTTTAAAAAAAAAATACTA
TAAAAAAAACTA

---YNLQERRFNRLYTVVLVNLSEVSLSTEQLSWWLRYAKGILLGENNKKASFWASWGIA
QVVATIVGVVSYPFDTVRRRMMMQAGRADILYSSTWDCWVKIATREGPTAFFKGALSNAI
RGSGGALVLVIYDEIQKLMGFEGGVGSE*enpqekkqdfn*kkkht*nik*nflkkkyyk
kn

Frame A:
---stiykrdgligyipwfw*icrrylclqssflggydtlkefy*vkttrklhsglhgvs
hklslqsle*sathsilfvee**ckpvvliffiqalgivg*rlppvkvqlpsskvlyqmp
sevqvvl*f*lfmmksknlwvlkvvlvlnkkirkkknriltkkknihei*nktf*kknti
kkt


Frame B:
---lqstretv*sviyrgfgesvggifvyraaflvvtir*rnfir*kqqesfilgfmgyr
tscrynrwssqlpirycs*knddasrsc*yslfkhlgllgkdchp*rsncllqrcfikch
qrfrwcfsfsyl**npktygf*rwcwf*irksarkktgf*lkkktymkykiklfkkkil*
kkl


Frame C:
---YNLQERRFNRLYTVVLVNLSEVSLSTEQLSWWLRYAKGILLGENNKKASFWASWGIA
QVVATIVGVVSYPFDTVRRRMMMQAGRADILYSSTWDCWVKIATREGPTAFFKGALSNAI
RGSGGALVLVIYDEIQKLMGFEGGVGSE*enpqekkqdfn*kkkht*nik*nflkkkyyk
kn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AR08 (FC-AR08Q) /CSM/FC/FC-AR/FC-AR08Q.Seq.d/                      900   0.0
VSC267 (VSC267Q) /CSM/VS/VSC2-C/VSC267Q.Seq.d/                        801   0.0
VSB739 (VSB739Q) /CSM/VS/VSB7-B/VSB739Q.Seq.d/                        801   0.0
VSB535 (VSB535Q) /CSM/VS/VSB5-B/VSB535Q.Seq.d/                        801   0.0
VSA839 (VSA839Q) /CSM/VS/VSA8-B/VSA839Q.Seq.d/                        801   0.0
VSA667 (VSA667Q) /CSM/VS/VSA6-C/VSA667Q.Seq.d/                        801   0.0
VSA479 (VSA479Q) /CSM/VS/VSA4-D/VSA479Q.Seq.d/                        801   0.0
SSM245 (SSM245Q) /CSM/SS/SSM2-B/SSM245Q.Seq.d/                        801   0.0
SSL639 (SSL639Q) /CSM/SS/SSL6-B/SSL639Q.Seq.d/                        801   0.0
SSJ856 (SSJ856Q) /CSM/SS/SSJ8-C/SSJ856Q.Seq.d/                        801   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF039211|AF039211.1 Dictyostelium discoideum ADP/ATP translocase mRNA, complete cds.   654  0.0  4
AF100676|AF100676.1 Dictyostelium discoideum ADP/ATP translocase gene, complete cds.   331  0.0  5
BJ026212|BJ026212.1 Oryzias latipes cDNA clone:MF01SSA169E07 : 3' end, single read.    56  5e-04  1
AU172247|AU172247.1 Oryzias latipes cDNA, clone:br8742.           54  0.002  1
BJ517070|BJ517070.1 Oryzias latipes cDNA clone:MF01FSA052F13, 3' end single read.    54  0.002  1
BJ501843|BJ501843.1 Oryzias latipes cDNA clone:MF01FSA051F05, 5' end single read.    54  0.002  1
BJ028512|BJ028512.1 Oryzias latipes cDNA clone:MF01SSA198G07 : 3' end, single read.    54  0.002  1
BJ540156|BJ540156.1 Oryzias latipes cDNA clone:MF01SSB029N22, 3' end single read.    54  0.002  1
BJ508864|BJ508864.1 Oryzias latipes cDNA clone:MF01FSA038H08, 3' end single read.    54  0.002  1
BJ489111|BJ489111.1 Oryzias latipes cDNA clone:MF01FSA009B22, 5' end single read.    54  0.002  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr...   220   1e-61
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03...   126   2e-32
AY725780_1(AY725780|pid:none) Oncometopia nigricans putative mit...   129   4e-32
DQ874397_1(DQ874397|pid:none) Pacifastacus leniusculus ATP/ADP t...   127   4e-32
(Q27238) RecName: Full=ADP,ATP carrier protein 1; AltName: Full=...   130   5e-32
EF660895_1(EF660895|pid:none) Artemia franciscana clone 1AF425.0...   123   1e-30
FJ263906_1(FJ263906|pid:none) Artemia franciscana clone 19AG2.08...   123   2e-30
S31935(S31935;S31936)ADP,ATP carrier protein - African malaria m...   125   2e-30
AY829762_1(AY829762|pid:none) Lonomia obliqua hypothetical prote...   123   3e-30
(Q9VZ70) RecName: Full=ADP,ATP carrier protein; AltName: Full=AD...   121   4e-30

 psg: 0.86  gvh: 0.50  alm: 0.35  top: 0.47  tms: 0.00  mit: 0.37  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for FC-AR08 is nuc

>FC-AR08Z.Seq
----------CTCTACAATCTACAAGAGAGACGGTTTAATCGGTTATATACCGTGGTTTT
GGTGAATCTGTCGGAGGTATCTTTGTCTACAGAGCAGCTTTCTTGGTGGTTACGATACGC
TAAAGGAATTTTATTAGGTGAAAACAACAAGAAAGCTTCATTCTGGGCTTCATGGGGTAT
CGCACAAGTTGTCGCTACAATCGTTGGAGTAGTCAGCTACCCATTCGATACTGTTCGTAG
AAGAATGATGATGCAAGCCGGTCGTGCTGATATTCTTTATTCAAGCACTTGGGATTGTTG
GGTAAAGATTGCCACCCGTGAAGGTCCAACTGCCTTCTTCAAAGGTGCTTTATCAAATGC
CATCAGAGGTTCAGGTGGTGCTTTAGTTTTAGTTATTTATGATGAAATCCAAAAACTTAT
GGGTTTTGAAGGTGGTGTTGGTTCTGAATAAGAAAATCCGCAAGAAAAAAAACAGGATTT
TAACTAAAAAAAAAAACATACATGAAATATAAAATAAAACTTTTTAAAAAAAAAATACTA
TAAAAAAAACTA