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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AR06
Library FC
(Link to library)
Clone ID FC-AR06
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID FC-AR06Z
(Link to Original site)
Representative DNA sequence 
>FC-AR06 (FC-AR06Q) /CSM/FC/FC-AR/FC-AR06Q.Seq.d/
XXXXXXXXXXTGATCCAAGAAAAGGTTATTCAAAATATGAAACTTATATTGATATTTTAA
TGTTTCAAATGGTAAATGCAAAAGAAAGAACTCCCGATGAATGGAAAGAAATATTTGAAT
TGGCTGATTTTAAATTAGAAAGAGTGGTTGATGATATTAAAACTGGTTGTATGGTAGTTT
CAAAAAAATAAAAAAGAATAAAAAATGGTATATAGGAAATAAATAAAAAAAAAGAAATAT
TTTTAATCCTTTTTATTTTATATCAGAACAATAAAAACTGGTGGATTGATTAAAAAAATT
AAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 4. 9
Translated Amino Acid sequence 
---DPRKGYSKYETYIDILMFQMVNAKERTPDEWKEIFELADFKLERVVDDIKTGCMVVS
KK*krikngi*einkkkeiflilfilyqnnknwwid*kn*kkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---DPRKGYSKYETYIDILMFQMVNAKERTPDEWKEIFELADFKLERVVDDIKTGCMVVS
KK*krikngi*einkkkeiflilfilyqnnknwwid*kn*kkkkkkkk


Frame B:
---iqekviqnmklilif*cfkw*mqkkelpmngkkylnwliln*kewlmilklvvw*fq
knkke*kmvyrk*ikkkkyf*sflfyirtiktgglikkikkkkkkkk


Frame C:
---skkrlfki*nly*yfnvsngkckrknsr*merni*ig*f*irksg**y*nwlygsfk
kikknkkwyignk*kkrnifnpfyfiseq*klvd*lkklkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AR06 (FC-AR06Q) /CSM/FC/FC-AR/FC-AR06Q.Seq.d/                      339   2e-92
FC-AS24 (FC-AS24Q) /CSM/FC/FC-AS/FC-AS24Q.Seq.d/                      323   9e-88
FC-AR05 (FC-AR05Q) /CSM/FC/FC-AR/FC-AR05Q.Seq.d/                      323   9e-88
FC-AK18 (FC-AK18Q) /CSM/FC/FC-AK/FC-AK18Q.Seq.d/                      323   9e-88
FC-199 (FC-199Q) /CSM/CG/CG-FC/FC-199Q.Seq.d/                         323   9e-88
AFC850 (AFC850Q) /CSM/AF/AFC8-C/AFC850Q.Seq.d/                         40   0.020
SHH245 (SHH245Q) /CSM/SH/SHH2-B/SHH245Q.Seq.d/                         36   0.31
VSI823 (VSI823Q) /CSM/VS/VSI8-A/VSI823Q.Seq.d/                         34   1.2
VSH122 (VSH122Q) /CSM/VS/VSH1-A/VSH122Q.Seq.d/                         34   1.2
VHM611 (VHM611Q) /CSM/VH/VHM6-A/VHM611Q.Seq.d/                         34   1.2
own update 2004. 5.31
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC006740|AC006740.2 Caenorhabditis elegans clone Y38B5, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    46  0.051  3
AQ108933|AQ108933.1 CIT-HSP-2372K5.TR CIT-HSP Homo sapiens genomic clone 2372K5, genomic survey sequence.    42  0.11  2
BH121758|BH121758.1 RPCI-24-300G16.TV RPCI-24 Mus musculus genomic clone RPCI-24-300G16 , DNA sequence.    40  0.13  2
BX465858|BX465858.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-179I14.    42  0.14  8
AC122289|AC122289.2 Mus musculus chromosome 3 clone RP23-254F12, complete sequence.    50  0.15  4
AC115252|AC115252.4 Rattus norvegicus clone CH230-249M2, WORKING DRAFT SEQUENCE, 4 unordered pieces.    48  0.22  3
AF016679|AF016679.1 Caenorhabditis elegans cosmid T28C12.    46  0.25  1
AC110667|AC110667.2 Canis familiaris clone RP81-226G12, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44  0.98  1
AF022997|AF022997.1 AF022997 Entamoeba dispar cDNAs Entamoeba dispar cDNA clone EDZP0059, mRNA sequence.    44  0.98  1
BZ930842|BZ930842.1 CH240_46N3.TJ CHORI-240 Bos taurus genomic clone CH240_46N3, genomic survey sequence.    44  0.98  1
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T638) RecName: Full=Des-methyl DIF-1 methyltransferase A;    ...    38   0.12
AM270059_4(AM270059|pid:none) Aspergillus niger contig An03c0180...    38   0.12
CP001056_1504(CP001056|pid:none) Clostridium botulinum B str. Ek...    35   0.58
AY268894_1(AY268894|pid:none) Papaver somniferum (R,S)-norcoclau...    35   0.76
AE017355_3431(AE017355|pid:none) Bacillus thuringiensis serovar ...    35   0.99
AE016879_3534(AE016879|pid:none) Bacillus anthracis str. Ames, c...    35   0.99
CP000001_3447(CP000001|pid:none) Bacillus cereus E33L, complete ...    35   0.99
AC005990_40(AC005990|pid:none) Arabidopsis thaliana chromosome 1...    34   1.3
AM269952_15(AM269952|pid:none) Aspergillus niger contig An01c005...    34   1.3
AY838877_7(AY838877|pid:none) Aspergillus fumigatus putative gli...    34   1.7
protein update 2009. 4.13
PSORT 

 psg: 0.83  gvh: 0.44  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AR06 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AR06Z
3' end seq. 
>FC-AR06Z.Seq
----------TGATCCAAGAAAAGGTTATTCAAAATATGAAACTTATATTGATATTTTAA
TGTTTCAAATGGTAAATGCAAAAGAAAGAACTCCCGATGAATGGAAAGAAATATTTGAAT
TGGCTGATTTTAAATTAGAAAGAGTGGTTGATGATATTAAAACTGGTTGTATGGTAGTTT
CAAAAAAATAAAAAAGAATAAAAAATGGTATATAGGAAATAAATAAAAAAAAAGAAATAT
TTTTAATCCTTTTTATTTTATATCAGAACAATAAAAACTGGTGGATTGATTAAAAAAATT
AAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 316
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -