>FC-AR05 (FC-AR05Q) /CSM/FC/FC-AR/FC-AR05Q.Seq.d/
XXXXXXXXXXCAGACTTTAAGATATTCTCATCCAAGATTAACTCATATTCCAGGTAATTT
CTTTGAAAGTGTACCAGAATCAGATTGTTATATCATGAAATTTATCCTTCATGATTGGCC
AACTCAAGATTGTGTTAAAATTTTAAAAACAATTTCAAAATCAATGAAACCAAATGCAAA
AATTCATTTATTTGAAATTATCATTGATCCAAGAAAAGGTTATTCAAAATATGAAACTTA
TATTGATATTTTAATGTTTCAAATGGTAAATGCAAAAGAAAGAACTCTCGATGAATGGAA
AGAATTATTTGAATTGGCTGATTTTAAATTAGAAAGAGTGGTTGATGATATTAAAACTGG
TTGTATGGTAGTTTCAAAAAAATAAAAAAGAATAAAAAATGGTATATAGGAAATAAATAA
AAAAAAAGAAATATTTTTAATCCTTTTTATTTTATATCAGAACAATAAAAACTGGTGGAT
TGATTAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAA

---TLRYSHPRLTHIPGNFFESVPESDCYIMKFILHDWPTQDCVKILKTISKSMKPNAKI
HLFEIIIDPRKGYSKYETYIDILMFQMVNAKERTLDEWKELFELADFKLERVVDDIKTGC
MVVSKK*krikngi*einkkkeiflilfilyqnnknwwid*kn*kkkkkkkk

Frame A:
---rl*diliqd*lifqvislkvyqnqivis*nlsfmigqlkivlkf*kqfqnq*nqmqk
fiylklsliqekviqnmklilif*cfkw*mqkkelsmngknylnwliln*kewlmilklv
vw*fqknkke*kmvyrk*ikkkkyf*sflfyirtiktgglikkikkkkkkkk


Frame B:
---dfkifsskinsysr*fl*kctrirllyheiyps*lansrlc*nfknnfkinetkckn
sfi*nyh*skkrlfki*nly*yfnvsngkckrknsr*merii*ig*f*irksg**y*nwl
ygsfkkikknkkwyignk*kkrnifnpfyfiseq*klvd*lkklkkkkkkkk


Frame C:
---TLRYSHPRLTHIPGNFFESVPESDCYIMKFILHDWPTQDCVKILKTISKSMKPNAKI
HLFEIIIDPRKGYSKYETYIDILMFQMVNAKERTLDEWKELFELADFKLERVVDDIKTGC
MVVSKK*krikngi*einkkkeiflilfilyqnnknwwid*kn*kkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AS24 (FC-AS24Q) /CSM/FC/FC-AS/FC-AS24Q.Seq.d/                      381   e-105
FC-AR05 (FC-AR05Q) /CSM/FC/FC-AR/FC-AR05Q.Seq.d/                      381   e-105
FC-AK18 (FC-AK18Q) /CSM/FC/FC-AK/FC-AK18Q.Seq.d/                      381   e-105
FC-199 (FC-199Q) /CSM/CG/CG-FC/FC-199Q.Seq.d/                         381   e-105
FC-AR06 (FC-AR06Q) /CSM/FC/FC-AR/FC-AR06Q.Seq.d/                      323   2e-87
VSD319 (VSD319Q) /CSM/VS/VSD3-A/VSD319Q.Seq.d/                         44   0.002
SSK861 (SSK861Q) /CSM/SS/SSK8-C/SSK861Q.Seq.d/                         44   0.002
CHD653 (CHD653Q) /CSM/CH/CHD6-C/CHD653Q.Seq.d/                         44   0.002
AFC850 (AFC850Q) /CSM/AF/AFC8-C/AFC850Q.Seq.d/                         40   0.033
VHD354 (VHD354Q) /CSM/VH/VHD3-C/VHD354Q.Seq.d/                         38   0.13

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Z68760|Z68760.2 Caenorhabditis elegans cosmid F36H1.              34  0.013  4
AC110667|AC110667.2 Canis familiaris clone RP81-226G12, WORKING DRAFT SEQUENCE, 2 ordered pieces.    44  0.035  4
AC092992|AC092992.2 Homo sapiens chromosome 3 clone RP11-500K7, WORKING DRAFT SEQUENCE, 19 unordered pieces.    34  0.038  6
AF482394|AF482394.1 Dictyostelium discoideum ABC transporter AbcG16 (abcG16) gene, complete cds.    44  0.044  2
AF083031|AF083031.2 Guillardia theta nucleomorph chromosome 3, complete sequence.    44  0.045  6
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36  0.049  10
AC142326|AC142326.1 Pan troglodytes chromosome 7 clone RP43-44O14, complete sequence.    42  0.067  4
AZ693515|AZ693515.1 ENTIB32TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    38  0.097  2
AC090120|AC090120.8 Oryza sativa chromosome 10 BAC OSJNBb0049A16 genomic sequence, complete sequence.    48  0.10  1
AC024244|AC024244.7 Homo sapiens chromosome 11 clone RP11-541L6, WORKING DRAFT SEQUENCE, 21 unordered pieces.    36  0.16  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268894_1(AY268894|pid:none) Papaver somniferum (R,S)-norcoclau...    82   8e-15
DQ419912_1(DQ419912|pid:none) Medicago truncatula IOMT 4 mRNA, c...    79   5e-14
(Q8T638) RecName: Full=Des-methyl DIF-1 methyltransferase A;    ...    77   2e-13
AF127374_45(AF127374|pid:none) Streptomyces lavendulae LinA-like...    76   4e-13
EU309726_1(EU309726|pid:none) Humulus lupulus O-methyltransferas...    74   2e-12
EF535147_1(EF535147|pid:none) Vitis vinifera O-methyltransferase...    74   2e-12
CP000653_1913(CP000653|pid:none) Enterobacter sp. 638, complete ...    74   2e-12
AM424783_1(AM424783|pid:none) Vitis vinifera contig VV78X230647....    73   4e-12
AY337459_1(AY337459|pid:none) Mentha x piperita flavonoid 8-O-me...    73   5e-12
EF084477_1(EF084477|pid:none) Picea sitchensis clone WS02716_H05...    73   5e-12

 psg: 0.80  gvh: 0.28  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: vacuolar

>> prediction for FC-AR05 is nuc

>FC-AR05Z.Seq
----------CAGACTTTAAGATATTCTCATCCAAGATTAACTCATATTCCAGGTAATTT
CTTTGAAAGTGTACCAGAATCAGATTGTTATATCATGAAATTTATCCTTCATGATTGGCC
AACTCAAGATTGTGTTAAAATTTTAAAAACAATTTCAAAATCAATGAAACCAAATGCAAA
AATTCATTTATTTGAAATTATCATTGATCCAAGAAAAGGTTATTCAAAATATGAAACTTA
TATTGATATTTTAATGTTTCAAATGGTAAATGCAAAAGAAAGAACTCTCGATGAATGGAA
AGAATTATTTGAATTGGCTGATTTTAAATTAGAAAGAGTGGTTGATGATATTAAAACTGG
TTGTATGGTAGTTTCAAAAAAATAAAAAAGAATAAAAAATGGTATATAGGAAATAAATAA
AAAAAAAGAAATATTTTTAATCCTTTTTATTTTATATCAGAACAATAAAAACTGGTGGAT
TGATTAAAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAA