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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AR02
Library FC
(Link to library)
Clone ID FC-AR02
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15981-1
Original site URL
Representative seq. ID FC-AR02P
(Link to Original site)
Representative DNA sequence 
>FC-AR02 (FC-AR02Q) /CSM/FC/FC-AR/FC-AR02Q.Seq.d/
AAATTAATAACTGATGAAGTAACTGGATTATTAGTTTATAATACAGGTAGACATTCAAGA
CCAACATGTAAAGATGGTATTTTTTCATATGATTCAAGTACATACCTATGGATGAGATTT
AATAATACTAAAGTATATTTAAGTAATCTTGGTTTAGGACATTGGGGTGATCGTGTTGAA
GTTGTTGGATTAGAAGCATATGATTCAATGAGACCAGCATCATTATTTGGTGCAGCATGG
TTATCAAATGCAATTGTTGATGGTCAAACCGGCAATATTCTTAGTAAATCACAATCATAC
AATAGACAAGGATTCCAATTTTATGATACCTACGTTACAACTATCCTCTCTCATATTACA
TTTAGAAATTTCATTCAAAATCCAACTTCTGTTTATCCAGATGATGATAATGTTGTAATT
ATCGCCTTGACATTCAGTGATCTTTATAAACCACAATTCATTTCATCAACGATTAATATC
ACCCTTGAAAATATTTTACCAGCACAAAATCATTGGTCXXXXXXXXXXCCAGCTGAATCT
TTCAATAGGGGTGGTGCTAAAATTGATGACGTTTATTGGGAATACATTTACCATATCAAT
GCTACAAATCCAAATTTTTCTCCAAATCAAGATGGTTTCTATACAAATTTTTCTTATACT
TTACCTTTTTCAACTTTTTAAAAAAAATTAAAAATAATTTTTAAATTTTTTTTTTAAAAA
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 4.15
Translated Amino Acid sequence 
KLITDEVTGLLVYNTGRHSRPTCKDGIFSYDSSTYLWMRFNNTKVYLSNLGLGHWGDRVE
VVGLEAYDSMRPASLFGAAWLSNAIVDGQTGNILSKSQSYNRQGFQFYDTYVTTILSHIT
FRNFIQNPTSVYPDDDNVVIIALTFSDLYKPQFISSTINITLENILPAQNHW---

---QLNLSIGVVLKLMTFIGNTFTISMLQIQIFLQIKMVSIQIFLILYLFQLFKKN*k*f
lnfffkkikkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
KLITDEVTGLLVYNTGRHSRPTCKDGIFSYDSSTYLWMRFNNTKVYLSNLGLGHWGDRVE
VVGLEAYDSMRPASLFGAAWLSNAIVDGQTGNILSKSQSYNRQGFQFYDTYVTTILSHIT
FRNFIQNPTSVYPDDDNVVIIALTFSDLYKPQFISSTINITLENILPAQNHW---

---paesfnrggakiddvyweyiyhinatnpnfspnqdgfytnfsytlpfstf*kklkii
fkfff*knkkkkkkkkkkkkkkkkk

Frame B:
n**lmk*ldy*fiiqvdiqdqhvkmvffhmiqvhtyg*dliilkyi*vilv*digvivlk
lld*khmiq*dqhhylvqhgyqmqllmvkpaiflvnhnhtidkdsnfmiptlqlsslilh
leisfkiqllfiqmmiml*lsp*hsvifinhnsfhqrlisplkifyqhkiig---

---QLNLSIGVVLKLMTFIGNTFTISMLQIQIFLQIKMVSIQIFLILYLFQLFKKN*k*f
lnfffkkikkkkkkkkkkkkkkkk

Frame C:
inn**snwiisl*yr*tfktnm*rwyffi*fkyipmdei**y*sifk*swfrtlg*sc*s
cwirsi*fnetsiiiwcsmvikcnc*wsnrqys**itiiq*tripil*ylrynyplsyyi
*kfhsksnfclsr***ccnyrldiq*sl*ttihfind*yhp*kyftstkslv---

---s*ifq*gwc*n**rllgihlpyqcykskffsksrwflykfflyftffnflkkiknnf
*ifflkk*kkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AR02 (FC-AR02Q) /CSM/FC/FC-AR/FC-AR02Q.Seq.d/                     1277   0.0
VSD791 (VSD791Q) /CSM/VS/VSD7-D/VSD791Q.Seq.d/                        258   1e-67
VSD475 (VSD475Q) /CSM/VS/VSD4-D/VSD475Q.Seq.d/                        258   1e-67
VHO882 (VHO882Q) /CSM/VH/VHO8-D/VHO882Q.Seq.d/                        258   1e-67
VHK676 (VHK676Q) /CSM/VH/VHK6-D/VHK676Q.Seq.d/                        258   1e-67
VHJ113 (VHJ113Q) /CSM/VH/VHJ1-A/VHJ113Q.Seq.d/                        258   1e-67
VHH761 (VHH761Q) /CSM/VH/VHH7-C/VHH761Q.Seq.d/                        258   1e-67
VHG723 (VHG723Q) /CSM/VH/VHG7-A/VHG723Q.Seq.d/                        258   1e-67
VHF575 (VHF575Q) /CSM/VH/VHF5-D/VHF575Q.Seq.d/                        236   4e-61
VHG195 (VHG195Q) /CSM/VH/VHG1-D/VHG195Q.Seq.d/                        234   2e-60
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AW017394|AW017394.1 EST272816 Schistosoma mansoni male, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMMAQ86 5' end, mRNA sequence.    44  0.12  2
AZ667527|AZ667527.1 ENTHP87TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    32  0.18  4
BI500982|BI500982.1 kx26e02.y1 Parastrongyloides trichosuri PA pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:EF2_CHICK Q90705 ELONGATION FACTOR 2 ;, mRNA sequence.    34  0.53  2
CC290892|CC290892.1 CH261-60N7_RM1.1 CH261 Gallus gallus genomic clone CH261-60N7, DNA sequence.    46  0.62  1
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34  0.70  9
AC118970|AC118970.7 Rattus norvegicus clone CH230-482G17, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  1.1  5
BX324041|BX324041.1 Arabidopsis thaliana transposon insertion STS SM_3.39209.    28  2.2  3
AC122067|AC122067.3 Rattus norvegicus clone CH230-58N2, *** SEQUENCING IN PROGRESS ***, 58 unordered pieces.    44  2.5  1
BX169182|BX169182.1 Danio rerio genomic clone DKEY-172I11, genomic survey sequence.    44  2.5  1
AL356864|AL356864.6 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP5-1051C18.    44  2.5  1
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_193(AC116984|pid:none) Dictyostelium discoideum chromos...   185   1e-45
(Q50985) RecName: Full=Competence lipoprotein comL; Flags: Precu...    35   2.5
protein update 2008.11.10
PSORT 

 psg: 0.75  gvh: 0.43  alm: 0.30  top: 0.60  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for FC-AR02 is cyt
5' end seq. ID FC-AR02F
5' end seq. 
>FC-AR02F.Seq
AAATTAATAACTGATGAAGTAACTGGATTATTAGTTTATAATACAGGTAGACATTCAAGA
CCAACATGTAAAGATGGTATTTTTTCATATGATTCAAGTACATACCTATGGATGAGATTT
AATAATACTAAAGTATATTTAAGTAATCTTGGTTTAGGACATTGGGGTGATCGTGTTGAA
GTTGTTGGATTAGAAGCATATGATTCAATGAGACCAGCATCATTATTTGGTGCAGCATGG
TTATCAAATGCAATTGTTGATGGTCAAACCGGCAATATTCTTAGTAAATCACAATCATAC
AATAGACAAGGATTCCAATTTTATGATACCTACGTTACAACTATCCTCTCTCATATTACA
TTTAGAAATTTCATTCAAAATCCAACTTCTGTTTATCCAGATGATGATAATGTTGTAATT
ATCGCCTTGACATTCAGTGATCTTTATAAACCACAATTCATTTCATCAACGATTAATATC
ACCCTTGAAAATATTTTACCAGCACAAAATCATTGGTC----------
Length of 5' end seq. 518
3' end seq. ID FC-AR02Z
3' end seq. 
>FC-AR02Z.Seq
----------NCCAGCTGAATCTTTCAATAGGGGTGGTGCTAAAATTGATGACGTTTATT
GGGAATACATTTACCATATCAATGCTACAAATCCAAATTTTTCTCCAAATCAAGATGGTT
TCTATACAAATTTTTCTTATACTTTACCTTTTTCAACTTTTTAAAAAAAATTAAAAATAA
TTTTTAAATTTTTTTTTTAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
Length of 3' end seq. 247
Connected seq. ID FC-AR02P
Connected seq. 
>FC-AR02P.Seq
AAATTAATAACTGATGAAGTAACTGGATTATTAGTTTATAATACAGGTAGACATTCAAGA
CCAACATGTAAAGATGGTATTTTTTCATATGATTCAAGTACATACCTATGGATGAGATTT
AATAATACTAAAGTATATTTAAGTAATCTTGGTTTAGGACATTGGGGTGATCGTGTTGAA
GTTGTTGGATTAGAAGCATATGATTCAATGAGACCAGCATCATTATTTGGTGCAGCATGG
TTATCAAATGCAATTGTTGATGGTCAAACCGGCAATATTCTTAGTAAATCACAATCATAC
AATAGACAAGGATTCCAATTTTATGATACCTACGTTACAACTATCCTCTCTCATATTACA
TTTAGAAATTTCATTCAAAATCCAACTTCTGTTTATCCAGATGATGATAATGTTGTAATT
ATCGCCTTGACATTCAGTGATCTTTATAAACCACAATTCATTTCATCAACGATTAATATC
ACCCTTGAAAATATTTTACCAGCACAAAATCATTGGTC----------CCAGCTGAATCT
TTCAATAGGGGTGGTGCTAAAATTGATGACGTTTATTGGGAATACATTTACCATATCAAT
GCTACAAATCCAAATTTTTCTCCAAATCAAGATGGTTTCTATACAAATTTTTCTTATACT
TTACCTTTTTCAACTTTTTAAAAAAAATTAAAAATAATTTTTAAATTTTTTTTTTAAAAA
AATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 764
Full length Seq ID -
Full length Seq. -
Length of full length seq. -