FC-AR01
Library FC
(Link to library)
Clone ID FC-AR01
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15659-1
Original site URL
Representative seq. ID FC-AR01Z
(Link to Original site)
Representative DNA sequence
>FC-AR01 (FC-AR01Q) /CSM/FC/FC-AR/FC-AR01Q.Seq.d/
XXXXXXXXXXCTGGTTGTGCCGTCGATTGGTGGTCTCTTGGAACTCTTCTCTATGAGATG
TTAACTGGTTTACCACCTTTCTACTCTCAAAATGTATCAACAATGTATCAAAAAATTTTA
AATGGTGAATTAAAAATTCCAACTTATATTTCACCAGAAGCAAAATCATTATTAGAAGGT
TTATTAACTAGAGAAGTTGATAAAAGACTTGGAACTAAAGGTGGTGGTGAAGTTAAACAA
CATCCATGGTTCAAAAATATTGACTGGGAGAAATTGGATAGAAAAGAAGTTGAAGTTCAC
TTTAAACCAAAAGTTAAATCTGGCACAGATATTAGTCAAATTGATCCAGTTTTCACTCAA
GAAAGACCAATGGATAGTTTGGTTGAAACAAGTGCTTTAGGTGATGCTATGGGTAAAGAT
ACAAGCTTTGAAGGTTTCACTTATGTAGCTGATTCAATCTTAAAGGATTAAAAAAAA
sequence update 1997. 4. 9
Translated Amino Acid sequence
---GCAVDWWSLGTLLYEMLTGLPPFYSQNVSTMYQKILNGELKIPTYISPEAKSLLEGL
LTREVDKRLGTKGGGEVKQHPWFKNIDWEKLDRKEVEVHFKPKVKSGTDISQIDPVFTQE
RPMDSLVETSALGDAMGKDTSFEGFTYVADSILKD*kk


Translated Amino Acid sequence (All Frames)
Frame A:
---wlcrrlvvswnssl*dvnwfttfllskcinnvsknfkw*iknsnlyftrskiiirrf
in*rs**ktwn*rww*s*ttsmvqky*lgeig*krs*ssl*tks*iwhry*sn*ssfhsr
ktng*fg*nkcfr*cyg*rykl*rfhlcs*fnlkglkk


Frame B:
---GCAVDWWSLGTLLYEMLTGLPPFYSQNVSTMYQKILNGELKIPTYISPEAKSLLEGL
LTREVDKRLGTKGGGEVKQHPWFKNIDWEKLDRKEVEVHFKPKVKSGTDISQIDPVFTQE
RPMDSLVETSALGDAMGKDTSFEGFTYVADSILKD*kk


Frame C:
---vvpsiggllelfsmrc*lvyhlstlkmyqqcikkf*mvn*kfqlifhqkqnhy*kvy
*leklikdlelkvvvklnnihgskiltgrnwiekklkftlnqklnlaqilvkliqfslkk
dqwivwlkqvl*vmlwvkiqalkvslm*liqs*rikk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

FC-AR01 (FC-AR01Q) /CSM/FC/FC-AR/FC-AR01Q.Seq.d/ 910 0.0
SSC206 (SSC206Q) /CSM/SS/SSC2-A/SSC206Q.Seq.d/ 900 0.0
SSE740 (SSE740Q) /CSM/SS/SSE7-B/SSE740Q.Seq.d/ 892 0.0
AFA767 (AFA767Q) /CSM/AF/AFA7-C/AFA767Q.Seq.d/ 862 0.0
AFA783 (AFA783Q) /CSM/AF/AFA7-D/AFA783Q.Seq.d/ 846 0.0
VFO624 (VFO624Q) /CSM/VF/VFO6-A/VFO624Q.Seq.d/ 833 0.0
AFL755 (AFL755Q) /CSM/AF/AFL7-C/AFL755Q.Seq.d/ 833 0.0
VFK237 (VFK237Q) /CSM/VF/VFK2-B/VFK237Q.Seq.d/ 783 0.0
VFJ888 (VFJ888Q) /CSM/VF/VFJ8-D/VFJ888Q.Seq.d/ 779 0.0
VFA754 (VFA754Q) /CSM/VF/VFA7-C/VFA754Q.Seq.d/ 759 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M59744|M59744.1 D.discoideum protein kinase 2 mRNA, complete cds. 908 0.0 1
AX771572|AX771572.1 Sequence 285 from Patent WO03004646. 44 3e-06 2
U15210|U15210.1 Dictyostelium discoideum rac-alpha serine/threonine kinase homolog mRNA, complete cds. 44 3e-06 2
AF093877|AF093877.1 Dictyostelium discoideum rac serine/threonine kinase homolog mRNA, complete cds. 54 5e-05 2
CD247003|CD247003.1 AGENCOURT_14100292 NIH_MGC_172 Homo sapiens cDNA 5', mRNA sequence. 54 0.002 1
AF209732|AF209732.1 Arabidopsis thaliana cultivar Neiderzens RPP13 (RPP13) gene, complete cds. 42 0.092 2
AC134540|AC134540.2 Mus musculus chromosome UNK clone RP24-400M10, WORKING DRAFT SEQUENCE, 10 unordered pieces. 48 0.095 1
BU941365|BU941365.1 AGENCOURT_10512484 NIH_MGC_127 Homo sapiens cDNA clone IMAGE:6713513 5', mRNA sequence. 48 0.095 1
AQ681429|AQ681429.1 HS_2152_A2_B02_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=2152 Col=4 Row=C, genomic survey sequence. 48 0.095 1
BG725860|BG725860.1 sae42h06.y1 Gm-c1051 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1051-8028 5' similar to TR:O23314 O23314 PROTEIN KINASE. ;, mRNA sequence. 36 0.10 3
dna update 2003. 7.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A38578(A38578) protein kinase 2 (EC 2.7.1.-) - slime mold (Dicty... 314 7e-85
AB218429_1(AB218429|pid:none) Schizophyllum commune stk-5 mRNA f... 155 6e-37
CR382131_275(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 146 3e-34
AF046923_1(AF046923|pid:none) Colletotrichum trifolii serine/thr... 144 1e-33
CU633872_113(CU633872|pid:none) Podospora anserina genomic DNA c... 140 1e-32
CR382129_154(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 140 1e-32
(P18961) RecName: Full=Serine/threonine-protein kinase YPK2/YKR2... 139 2e-32
AE017350_106(AE017350|pid:none) Cryptococcus neoformans var. neo... 139 3e-32
(Q6TJY3) RecName: Full=Ribosomal protein S6 kinase beta-1; ... 136 2e-31
AM270012_2(AM270012|pid:none) Aspergillus niger contig An02c0170... 136 2e-31
protein update 2009. 4.13
PSORT

psg: 0.75 gvh: 0.45 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for FC-AR01 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID FC-AR01Z
3' end seq.
>FC-AR01Z.Seq
----------CTGGTTGTGCCGTCGATTGGTGGTCTCTTGGAACTCTTCTCTATGAGATG
TTAACTGGTTTACCACCTTTCTACTCTCAAAATGTATCAACAATGTATCAAAAAATTTTA
AATGGTGAATTAAAAATTCCAACTTATATTTCACCAGAAGCAAAATCATTATTAGAAGGT
TTATTAACTAGAGAAGTTGATAAAAGACTTGGAACTAAAGGTGGTGGTGAAGTTAAACAA
CATCCATGGTTCAAAAATATTGACTGGGAGAAATTGGATAGAAAAGAAGTTGAAGTTCAC
TTTAAACCAAAAGTTAAATCTGGCACAGATATTAGTCAAATTGATCCAGTTTTCACTCAA
GAAAGACCAATGGATAGTTTGGTTGAAACAAGTGCTTTAGGTGATGCTATGGGTAAAGAT
ACAAGCTTTGAAGGTTTCACTTATGTAGCTGATTCAATCTTAAAGGATTAAAAAAAA
Length of 3' end seq. 467
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -