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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AQ14
Library FC
(Link to library)
Clone ID FC-AQ14
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15980-1
Original site URL
Representative seq. ID FC-AQ14P
(Link to Original site)
Representative DNA sequence 
>FC-AQ14 (FC-AQ14Q) /CSM/FC/FC-AQ/FC-AQ14Q.Seq.d/
CAAATTCAATATTTGGTGTAGAGTTGGAAGTATTAATAGAGAATGATAATTCAAAAAAGA
AAGGCAATGGTGTTGAATTAGAGGTCCCATTAATATTGACTCAATTTGTTCAAGCTCTAT
TGAAATTGGAGTCATTCAAAATGGATGGTGTTTTTGTTTCACTTCCATCTCATTTCAATA
TTCAACAAGAGAAACAAAAACTAGATCAAACTGGTACTTTAGAAAATATTACTGATGTTT
ATTTAATCGCAAGTTTATTTAAAAATTGGATTGGTGATTTACCAAATCCATTAATAAGTT
ATGCTATTTAGTAAGTTTTGATTCTACTTTTTTTTATTATTCAATGCTACTCTATTTACT
AATTACCCTCTCACTCTCTAATATTTTTAAATTGTTTAAATTATTTATAAATAGTCAAGA
GATCATTGAAGCACCAGATAATGCAXXXXXXXXXXAAAAATAATATTTTCACATTGTCAA
TAAAAAATCTATTATAAATAAACTTGTTATCCCTATTTATTTATTTATTGTTTTTTTATT
ACTAAGGCTTCAAATAATGTACCCCCTTTATTCATTGCTGTTGTTGTTGTTGTTGTTGTA
ATTGTTGTAGTACAACTGTTATTGATGTAGTTATGTGGTGTAATCATCTCTGTATTTGTT
CACTAATATATCATGAATCCTGATAGAGATTAAGAAGATGAAGGTCACTTTGATTTAAAA
TGTCAACCAATTCAAGAAGAAGAAGAAATAGAGAGTTCAGTTAAAGAAAGAATAGGATGT
TTTCATATTATTATACGGAAGTCAGTAGATGTAATTTGTCAAAATAGAGTTTGCAAAAAA
TCAAAATCTTCAAAAAAAATAAACTATATATCTTCAAAATAAAAAAAAAAAAAAAAAAAA
AAA
sequence update 1997. 4. 9
Translated Amino Acid sequence 
kfniwcrvgsinre**fkkerqwc*irgpinidsicsssieigviqngwcfcftsisfqy
stretktrsnwyfrkyy*clfnrkfi*kldw*FTKSINKLCYLVSFDSTFFYYSMLLYLL
ITLSLSNIFKLFKLFINSQEIIEAPDNA---

---KNNIFTLSIKNLL*inllslfiyllffyy*gfk*ctpfihccccccccnccsttvid
vvmwcnhlcicsliyhes**rlrr*rsl*fkmstnsrrrrnrefs*rknrmfsyyytevs
rcnlsk*slqkikifkknklyifkikkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qiqylv*swky**rmiiqkrkamvln*rsh*y*lnlfkly*nwshskwmvflfhfhlisi
fnkrnkn*iklvl*killmfi*sqvylkiglviyqih**vmlfskf*fyffllfnatlft
nypltl*yf*iv*iiyk*srdh*str*c---

---KNNIFTLSIKNLL*inllslfiyllffyy*gfk*ctpfihccccccccnccsttvid
vvmwcnhlcicsliyhes**rlrr*rsl*fkmstnsrrrrnrefs*rknrmfsyyytevs
rcnlsk*slqkikifkknklyifkikkkkkkk

Frame B:
kfniwcrvgsinre**fkkerqwc*irgpinidsicsssieigviqngwcfcftsisfqy
stretktrsnwyfrkyy*clfnrkfi*kldw*FTKSINKLCYLVSFDSTFFYYSMLLYLL
ITLSLSNIFKLFKLFINSQEIIEAPDNA---

---kiifshcq*kiyyk*tcypylfiycffitkasnnvpplfiavvvvvvvivvvqlllm
*lcgviisvfvh*yimnpdrd*edeghfdlkcqpiqeeeeiessvkerigcfhiiirksv
dvicqnrvckksksskkinyissk*kkkkkkk

Frame C:
nsifgvelevliendnskkkgngvelevpliltqfvqallklesfkmdgvfvslpshfni
qqekqkldqtgtlenitdvyliaslfknwigdlpnplisyai**vlillffiiqcysiy*
lpshsliflnclnyl*ivkrslkhqim---

---k*yfhivnkksiinklvipiylfivflllrlqimyplysllllllll*ll*yncy*c
syvv*sslylftnis*ilieikkmkvtli*nvnqfkkkkk*rvqlkke*dvfillygsq*
m*fvkiefaknqnlqkk*tiylqnkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AQ14 (FC-AQ14Q) /CSM/FC/FC-AQ/FC-AQ14Q.Seq.d/                      997   0.0
AHN221 (AHN221Q) /CSM/AH/AHN2-A/AHN221Q.Seq.d/                         60   6e-08
VSH664 (VSH664Q) /CSM/VS/VSH6-C/VSH664Q.Seq.d/                         40   0.058
VHI708 (VHI708Q) /CSM/VH/VHI7-A/VHI708Q.Seq.d/                         40   0.058
VHC861 (VHC861Q) /CSM/VH/VHC8-C/VHC861Q.Seq.d/                         40   0.058
SSF635 (SSF635Q) /CSM/SS/SSF6-B/SSF635Q.Seq.d/                         38   0.23
SLF221 (SLF221Q) /CSM/SL/SLF2-A/SLF221Q.Seq.d/                         38   0.23
AFE627 (AFE627Q) /CSM/AF/AFE6-B/AFE627Q.Seq.d/                         38   0.23
VSF192 (VSF192Q) /CSM/VS/VSF1-D/VSF192Q.Seq.d/                         36   0.90
VHP655 (VHP655Q) /CSM/VH/VHP6-C/VHP655Q.Seq.d/                         36   0.90
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    64  8e-09  6
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36  6e-04  8
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34  0.001  9
AC096571|AC096571.1 Homo sapiens BAC clone RP11-395B18 from 4, complete sequence.    50  0.002  2
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    42  0.003  7
AL096782|AL096782.3 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P8.    34  0.004  8
AC097821|AC097821.6 Rattus norvegicus clone CH230-62G21, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40  0.008  6
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32  0.012  9
AC108945|AC108945.4 Mus musculus chromosome 15 clone RP23-119J11, complete sequence.    36  0.037  8
AC102374|AC102374.5 Mus musculus clone RP23-278G2, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    38  0.037  6
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54GC9) RecName: Full=Uncharacterized protein DDB_G0290235;           60   1e-07
AB290183_1(AB290183|pid:none) Homo sapiens mRNA for MYO9A varian...    51   6e-05
(Q9NUY2) RecName: Full=Myosin-IXa; AltName: Full=Unconventional ...    51   6e-05
AK029836_1(AK029836|pid:none) Mus musculus adult male testis cDN...    51   6e-05
AF117888_1(AF117888|pid:none) Homo sapiens myosin-IXa mRNA, comp...    51   6e-05
AK001923_1(AK001923|pid:none) Homo sapiens cDNA FLJ11061 fis, cl...    51   6e-05
(Q9Z1N3) RecName: Full=Myosin-IXa; AltName: Full=Unconventional ...    51   6e-05
BC098580_1(BC098580|pid:none) Homo sapiens Rho GTPase activating...    45   0.002
BC047918_1(BC047918|pid:none) Homo sapiens Rho GTPase activating...    45   0.002
(Q8N264) RecName: Full=Rho GTPase-activating protein 24; AltName...    45   0.002
protein update 2009. 4.13
PSORT 

 psg: 0.80  gvh: 0.69  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 32.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for FC-AQ14 is mit
5' end seq. ID FC-AQ14F
5' end seq. 
>FC-AQ14F.Seq
CAAATTCAATATTTGGTGTAGAGTTGGAAGTATTAATAGAGAATGATAATTCAAAAAAGA
AAGGCAATGGTGTTGAATTAGAGGTCCCATTAATATTGACTCAATTTGTTCAAGCTCTAT
TGAAATTGGAGTCATTCAAAATGGATGGTGTTTTTGTTTCACTTCCATCTCATTTCAATA
TTCAACAAGAGAAACAAAAACTAGATCAAACTGGTACTTTAGAAAATATTACTGATGTTT
ATTTAATCGCAAGTTTATTTAAAAATTGGATTGGTGATTTACCAAATCCATTAATAAGTT
ATGCTATTTAGTAAGTTTTGATTCTACTTTTTTTTATTATTCAATGCTACTCTATTTACT
AATTACCCTCTCACTCTCTAATATTTTTAAATTGTTTAAATTATTTATAAATAGTCAAGA
GATCATTGAAGCACCAGATAATGCA----------
Length of 5' end seq. 445
3' end seq. ID FC-AQ14Z
3' end seq. 
>FC-AQ14Z.Seq
----------AAAAATAATATTTTCACATTGTCAATAAAAAATCTATTATAAATAAACTT
GTTATCCCTATTTATTTATTTATTGTTTTTTTATTACTAAGGCTTCAAATAATGTACCCC
CTTTATTCATTGCTGTTGTTGTTGTTGTTGTTGTAATTGTTGTAGTACAACTGTTATTGA
TGTAGTTATGTGGTGTAATCATCTCTGTATTTGTTCACTAATATATCATGAATCCTGATA
GAGATTAAGAAGATGAAGGTCACTTTGATTTAAAATGTCAACCAATTCAAGAAGAAGAAG
AAATAGAGAGTTCAGTTAAAGAAAGAATAGGATGTTTTCATATTATTATACGGAAGTCAG
TAGATGTAATTTGTCAAAATAGAGTTTGCAAAAAATCAAAATCTTCAAAAAAAATAAACT
ATATATCTTCAAAATAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 448
Connected seq. ID FC-AQ14P
Connected seq. 
>FC-AQ14P.Seq
CAAATTCAATATTTGGTGTAGAGTTGGAAGTATTAATAGAGAATGATAATTCAAAAAAGA
AAGGCAATGGTGTTGAATTAGAGGTCCCATTAATATTGACTCAATTTGTTCAAGCTCTAT
TGAAATTGGAGTCATTCAAAATGGATGGTGTTTTTGTTTCACTTCCATCTCATTTCAATA
TTCAACAAGAGAAACAAAAACTAGATCAAACTGGTACTTTAGAAAATATTACTGATGTTT
ATTTAATCGCAAGTTTATTTAAAAATTGGATTGGTGATTTACCAAATCCATTAATAAGTT
ATGCTATTTAGTAAGTTTTGATTCTACTTTTTTTTATTATTCAATGCTACTCTATTTACT
AATTACCCTCTCACTCTCTAATATTTTTAAATTGTTTAAATTATTTATAAATAGTCAAGA
GATCATTGAAGCACCAGATAATGCA----------AAAAATAATATTTTCACATTGTCAA
TAAAAAATCTATTATAAATAAACTTGTTATCCCTATTTATTTATTTATTGTTTTTTTATT
ACTAAGGCTTCAAATAATGTACCCCCTTTATTCATTGCTGTTGTTGTTGTTGTTGTTGTA
ATTGTTGTAGTACAACTGTTATTGATGTAGTTATGTGGTGTAATCATCTCTGTATTTGTT
CACTAATATATCATGAATCCTGATAGAGATTAAGAAGATGAAGGTCACTTTGATTTAAAA
TGTCAACCAATTCAAGAAGAAGAAGAAATAGAGAGTTCAGTTAAAGAAAGAATAGGATGT
TTTCATATTATTATACGGAAGTCAGTAGATGTAATTTGTCAAAATAGAGTTTGCAAAAAA
TCAAAATCTTCAAAAAAAATAAACTATATATCTTCAAAATAAAAAAAAAAAAAAAAAAAA
AAA
Length of connected seq. 893
Full length Seq ID -
Full length Seq. -
Length of full length seq. -