>FC-AP24 (FC-AP24Q) /CSM/FC/FC-AP/FC-AP24Q.Seq.d/
AAACACATAAAATGATCTCCAAATTCTCTCTCTTTGTCGAAATCGGACGTGTTGTTGTCA
TCAACTATGGTGAATACATCAACAAAACTGCCGTCATCATTGATGTCTTGGATCAAAACA
GAGCTTTAGTTGCTGGTCCACACAGTGGCGTCGAACGTCACATCATTAACTTCAAATGGA
TCAATCTTACTCCATTAAAAGTTAACATCCAAAGAGGTGCCAGAATTAACACCCTCATCG
CTGCCATCAAAGCTGCTGACCTCGAAACCAAAATTGCTGCCCTCTCTGCCGTTAAGAAAA
TCAACGCAAGAGCCACCAAATCAAACCAAACTGATTTCGAACGTTTCAAAGCCAACCTCA
TCAGACGTAAACTCAACAAGAAAGTTTCAGGTGAAGTTAAGAAATTAGTTAACATTGCCA
ACAGAGCTGCTCACAAGAAAGCTGTTGCCCAAAAAGCTGCTGGTCACGTCAAGAAAACTT
TATAAATAAAATGTTTACTAATAATATAAAATTTTAAAAATATATXXXXXXXXXXAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA

khik*spnslslsksdvllsstmvntstklpsslmswiktel*llvhtvasnvtsltsng
sillh*kltskevpeltpsslpsklltskpkllpslplrkstqeppnqtklisnvskpts
sdvnstrkfqvklrn*ltlptelltrkllpkkllvtsrklyk*nvy**YKILKIY---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Frame A:
khik*spnslslsksdvllsstmvntstklpsslmswiktel*llvhtvasnvtsltsng
sillh*kltskevpeltpsslpsklltskpkllpslplrkstqeppnqtklisnvskpts
sdvnstrkfqvklrn*ltlptelltrkllpkkllvtsrklyk*nvy**YKILKIY---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Frame B:
nt*ndlqilslcrnrtccchqlw*ihqqncrhh*clgskqsfscwstqwrrtshh*lqmd
qsysiks*hpkrcqn*hphrchqsc*prnqnccplcr*enqrkshqikpn*frtfqsqph
qt*tqqesfr*s*eis*hcqqscsqesccpkscwsrqenfinkmftnnikf*ky---

---KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Frame C:
thkmiskfslfveigrvvvinygeyinktaviidvldqnralvagphsgverhiinfkwi
nltplkvniqrgarintliaaikaadletkiaalsavkkinaratksnqtdferfkanli
rrklnkkvsgevkklvnianraahkkavaqkaaghvkktl*ikcllii*nfkni---

---kkkkkkkkkkkkkkkkkkkkkkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD663 (VSD663Q) /CSM/VS/VSD6-C/VSD663Q.Seq.d/                       1041   0.0
FC-BE24 (FC-BE24Q) /CSM/FC/FC-BE/FC-BE24Q.Seq.d/                     1041   0.0
FC-AP24 (FC-AP24Q) /CSM/FC/FC-AP/FC-AP24Q.Seq.d/                     1041   0.0
FC-272 (FC-272Q) /CSM/CG/CG-FC/FC-272Q.Seq.d/                        1041   0.0
VHC743 (VHC743Q) /CSM/VH/VHC7-B/VHC743Q.Seq.d/                       1037   0.0
FC-AR18 (FC-AR18Q) /CSM/FC/FC-AR/FC-AR18Q.Seq.d/                     1031   0.0
VSG769 (VSG769Q) /CSM/VS/VSG7-C/VSG769Q.Seq.d/                       1027   0.0
SSG249 (SSG249Q) /CSM/SS/SSG2-C/SSG249Q.Seq.d/                       1005   0.0
VHE675 (VHE675Q) /CSM/VH/VHE6-D/VHE675Q.Seq.d/                        997   0.0
VSG485 (VSG485Q) /CSM/VS/VSG4-D/VSG485Q.Seq.d/                        946   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL672152|AL672152.8 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-426A16.    46  0.001  4
BU811390|BU811390.1 UL83TG02 Populus leaf cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    52  0.008  1
BZ723047|BZ723047.1 PUDAK12TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa142B23, DNA sequence.    46  0.009  2
BZ748478|BZ748478.1 PUDAL01TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa142B02, DNA sequence.    46  0.011  2
BZ720269|BZ720269.1 PUDAL01TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa142B02, DNA sequence.    46  0.011  2
H51996|H51996.1 yq32g05.r1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone IMAGE:197528 5', mRNA sequence.    42  0.085  2
AL591485|AL591485.7 Human DNA sequence from clone RP11-293C4 on chromosome 6.    38  0.11  4
BX465224|BX465224.7 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-85C12.    46  0.18  5
H48018|H48018.1 yp79a12.r1 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone IMAGE:193630 5', mRNA sequence.    42  0.30  2
AC118130|AC118130.5 Rattus norvegicus clone CH230-305G16, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    42  0.32  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54Z09) RecName: Full=60S ribosomal protein L14;                     265   1e-69
EU955338_1(EU955338|pid:none) Zea mays clone 1527557 60 ribosoma...   117   2e-25
CP001142_62(CP001142|pid:none) Phaeodactylum tricornutum CCAP 10...   102   7e-21
BC092249_1(BC092249|pid:none) Mus musculus ribosomal protein L14...    99   9e-20
AK007807_1(AK007807|pid:none) Mus musculus 10 day old male pancr...    99   9e-20
(Q9CR57) RecName: Full=60S ribosomal protein L14;  &AK012277_1(A...    99   9e-20
AK010600_1(AK010600|pid:none) Mus musculus ES cells cDNA, RIKEN ...    99   9e-20
(P50914) RecName: Full=60S ribosomal protein L14; AltName: Full=...    98   2e-19
AY891859_1(AY891859|pid:none) Synthetic construct Homo sapiens c...    98   2e-19
BC029036_1(BC029036|pid:none) Homo sapiens ribosomal protein L14...    98   2e-19

 psg: 0.03  gvh: -0.41  alm: 0.94  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 3.57  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for FC-AP24 is nuc

>FC-AP24F.Seq
AAACACATAAAATGATCTCCAAATTCTCTCTCTTTGTCGAAATCGGACGTGTTGTTGTCA
TCAACTATGGTGAATACATCAACAAAACTGCCGTCATCATTGATGTCTTGGATCAAAACA
GAGCTTTAGTTGCTGGTCCACACAGTGGCGTCGAACGTCACATCATTAACTTCAAATGGA
TCAATCTTACTCCATTAAAAGTTAACATCCAAAGAGGTGCCAGAATTAACACCCTCATCG
CTGCCATCAAAGCTGCTGACCTCGAAACCAAAATTGCTGCCCTCTCTGCCGTTAAGAAAA
TCAACGCAAGAGCCACCAAATCAAACCAAACTGATTTCGAACGTTTCAAAGCCAACCTCA
TCAGACGTAAACTCAACAAGAAAGTTTCAGGTGAAGTTAAGAAATTAGTTAACATTGCCA
ACAGAGCTGCTCACAAGAAAGCTGTTGCCCAAAAAGCTGCTGGTCACGTCAAGAAAACTT
TATAAATAAAATGTTTACTAATAATATAAAATTTTAAAAATATAT----------