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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AP23
Library FC
(Link to library)
Clone ID FC-AP23
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16094-1
Original site URL
Representative seq. ID FC-AP23P
(Link to Original site)
Representative DNA sequence 
>FC-AP23 (FC-AP23Q) /CSM/FC/FC-AP/FC-AP23Q.Seq.d/
CAAATACATAATCTCTTTTTTGAAAATGTCCGAAAATAACGAAATTGAAATGGAACTCCC
ATTTGACTCATCTGCAATTACTTCAACAGAAGTTTTAGACAGAGTTAATGCTTTACTCAC
TCTCCAAGATACACAAAATGAATTAACGGAACAAATGGAAAAAGAAATTTTAGAAATTGA
AAAGAAATATTTAAAAAAATTCCAACCACTCGCAGAAAAGAGATTTGAAATTGTATCAGG
TAAAGTTGAACCAACCAAAGAAGATCAACAATGTAAAGCACCAATTCAAGTTGAAAACCT
TAAATCTGTTCCAACCGATAAAGGTATTCCAAAGTTCTGGTTACATGTCTTACAAAACAC
CGAAGTCAAAGATATCATTGAAGAATGTGATATTGAAGCTTTAGAGTATTTAGTTGATAT
TAAAATCGTTCAAGTCGGTGACGCACAAGACTACTCTTTAGATTTCCACTTTAGTGATAA
TCCATTCTTCACCAACACTGTCATCTCCAAAACCGXXXXXXXXXXAAACTGTTAAATCAA
AACCAACCAAAGGTAAAGCTGCCACCACCACCTCTACCACCGTTCAAGAGGTCGTCCCAT
GTTTCTTTAGCACCTTTGTCTCACCAAACCAAGATCCAACCAGTGATGAAGAAGCTGATG
AAATCATGTACATCCAATACCAAATTATCGCCAAATTAAAGGATATCGTTATCCCAGAAG
CCGTTAACTTCTTTTTAGGTCGTGCTTCAGATGCCGAAGAAAACGATTATGACTTTGGTG
AAGATTTCGAAGATGAAGAAGGTGAAGATGATGATGAAGAAGATGATGAAGAAGAACAAA
CCATTAAAAAACCATCAGGTAAAGGTAAAGCTCAACCACAACAACCACAAGATTGTAAAC
AACAATAAATTTAATGGTTGAAAAAAAAAAAAGAAAAAAAAATATGTTATACTTTTATCA
TTGAAAAAAAAAAAAAAAAACCTTTTAAAAAAAAAAT
sequence update 1997. 3.28
Translated Amino Acid sequence 
KYIISFLKMSENNEIEMELPFDSSAITSTEVLDRVNALLTLQDTQNELTEQMEKEILEIE
KKYLKKFQPLAEKRFEIVSGKVEPTKEDQQCKAPIQVENLKSVPTDKGIPKFWLHVLQNT
EVKDIIEECDIEALEYLVDIKIVQVGDAQDYSLDFHFSDNPFFTNTVISKT---

---TVKSKPTKGKAATTTSTTVQEVVPCFFSTFVSPNQDPTSDEEADEIMYIQYQIIAKL
KDIVIPEAVNFFLGRASDAEENDYDFGEDFEDEEGEDDDEEDDEEEQTIKKPSGKGKAQP
QQPQDCKQQ*i*wlkkkkekkicytfiiekkkkkpfkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qihnlffenvrk*rn*ngtpi*licnyfnrsfrqs*cfthsprytk*ingtngkrnfrn*
keifkkipttrrkei*ncir*s*tnqrrstm*stnss*kp*icsnr*ryskvlvtcltkh
rsqryh*rm*y*sfrvfs*y*nrssr*rtrllfrfpl***silhqhchlqn---

---kllnqnqpkvklpppplppfkrsshvslaplshqtkiqpvmkklmksctsntklspn
*rislsqkpltsf*vvlqmpkktimtlvkiskmkkvkmmmkkmmkknkplknhqvkvkln
hnnhkivnnnkfng*kkkkkkkyvillslkkkkknllkkk

Frame B:
KYIISFLKMSENNEIEMELPFDSSAITSTEVLDRVNALLTLQDTQNELTEQMEKEILEIE
KKYLKKFQPLAEKRFEIVSGKVEPTKEDQQCKAPIQVENLKSVPTDKGIPKFWLHVLQNT
EVKDIIEECDIEALEYLVDIKIVQVGDAQDYSLDFHFSDNPFFTNTVISKT---

---nc*iktnqr*schhhlyhrsrgrpmfl*hlcltkprsnq**rs**nhvhpipnyrqi
kgyryprsr*llfrscfrcrrkrl*lw*rfrr*rr*r***rr**rrtnh*ktir*r*sst
ttttrl*ttinlmvekkkrkknmlyfyh*kkkkktf*kkn

Frame C:
nt*slf*kcpkitklkwnshlthlqllqqkf*telmlyslskihkmn*rnkwkkkf*klk
rni*knsnhsqkrdlklyqvklnqpkkinnvkhqfklktlnlfqpikvfqssgymsyktp
kskislknvilkl*si*lilksfksvthkttl*istlviihssptlsspkp---

---TVKSKPTKGKAATTTSTTVQEVVPCFFSTFVSPNQDPTSDEEADEIMYIQYQIIAKL
KDIVIPEAVNFFLGRASDAEENDYDFGEDFEDEEGEDDDEEDDEEEQTIKKPSGKGKAQP
QQPQDCKQQ*i*wlkkkkekkicytfiiekkkkkpfkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AP23 (FC-AP23Q) /CSM/FC/FC-AP/FC-AP23Q.Seq.d/                     1439   0.0
FC-271 (FC-271Q) /CSM/CG/CG-FC/FC-271Q.Seq.d/                        1439   0.0
VSG374 (VSG374Q) /CSM/VS/VSG3-D/VSG374Q.Seq.d/                        959   0.0
VFF672 (VFF672Q) /CSM/VF/VFF6-C/VFF672Q.Seq.d/                        955   0.0
VSI289 (VSI289Q) /CSM/VS/VSI2-D/VSI289Q.Seq.d/                        950   0.0
VFA432 (VFA432Q) /CSM/VF/VFA4-B/VFA432Q.Seq.d/                        950   0.0
VSI726 (VSI726Q) /CSM/VS/VSI7-B/VSI726Q.Seq.d/                        948   0.0
SLH411 (SLH411Q) /CSM/SL/SLH4-A/SLH411Q.Seq.d/                        944   0.0
VSG317 (VSG317Q) /CSM/VS/VSG3-A/VSG317Q.Seq.d/                        918   0.0
VSA875 (VSA875Q) /CSM/VS/VSA8-D/VSA875Q.Seq.d/                        500   e-140
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40  0.005  8
AE010628|AE010628.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 170 of 197 of the complete genome.    52  0.013  1
AC006875|AC006875.1 Caenorhabditis elegans clone Y54F10x, *** SEQUENCING IN PROGRESS ***, 25 unordered pieces.    48  0.21  1
AC006787|AC006787.1 Caenorhabditis elegans clone Y48G9, WORKING DRAFT SEQUENCE, 7 unordered pieces.    48  0.21  1
AF040657|AF040657.2 Caenorhabditis elegans cosmid T20H9, complete sequence.    48  0.21  1
AF038604|AF038604.3 Caenorhabditis elegans cosmid B0546, complete sequence.    46  0.81  1
AC111461|AC111461.5 Rattus norvegicus clone CH230-213C21, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.81  1
CD473092|CD473092.1 nad03-8ms1-d06 Nad03 Nuphar advena cDNA clone nad03-8ms1-d06 5', mRNA sequence.    46  0.81  1
AW187657|AW187657.1 BNLGHi8591 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence.    38  0.95  2
AE010502|AE010502.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 44 of 197 of the complete genome.    36  1.5  3
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438614_1(AJ438614|pid:none) Nicotiana tabacum mRNA for nucleos...    90   1e-16
AJ438615_1(AJ438615|pid:none) Nicotiana tabacum mRNA for nucleos...    86   2e-15
AJ438612_1(AJ438612|pid:none) Oryza sativa mRNA for nucleosome a...    86   2e-15
AC119291_18(AC119291|pid:none) Oryza sativa (japonica cultivar-g...    86   2e-15
AY100480_1(AY100480|pid:none) Zea mays nucleosome/chromatin asse...    83   1e-14
AC138526_13(AC138526|pid:none) Medicago truncatula clone mth2-17...    83   2e-14
AY232823_1(AY232823|pid:none) Zea mays nucleosome/chromatin asse...    83   2e-14
AY496136_1(AY496136|pid:none) Capsicum annuum induced stolon tip...    83   2e-14
AE013599_3951(AE013599|pid:none) Drosophila melanogaster chromos...    82   3e-14
AK295147_1(AK295147|pid:none) Homo sapiens cDNA FLJ60539 complet...    82   4e-14
protein update 2009. 4.13
PSORT 

 psg: 0.50  gvh: 0.40  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for FC-AP23 is cyt
5' end seq. ID FC-AP23F
5' end seq. 
>FC-AP23F.Seq
CAAATACATAATCTCTTTTTTGAAAATGTCCGAAAATAACGAAATTGAAATGGAACTCCC
ATTTGACTCATCTGCAATTACTTCAACAGAAGTTTTAGACAGAGTTAATGCTTTACTCAC
TCTCCAAGATACACAAAATGAATTAACGGAACAAATGGAAAAAGAAATTTTAGAAATTGA
AAAGAAATATTTAAAAAAATTCCAACCACTCGCAGAAAAGAGATTTGAAATTGTATCAGG
TAAAGTTGAACCAACCAAAGAAGATCAACAATGTAAAGCACCAATTCAAGTTGAAAACCT
TAAATCTGTTCCAACCGATAAAGGTATTCCAAAGTTCTGGTTACATGTCTTACAAAACAC
CGAAGTCAAAGATATCATTGAAGAATGTGATATTGAAGCTTTAGAGTATTTAGTTGATAT
TAAAATCGTTCAAGTCGGTGACGCACAAGACTACTCTTTAGATTTCCACTTTAGTGATAA
TCCATTCTTCACCAACACTGTCATCTCCAAAACCG----------
Length of 5' end seq. 515
3' end seq. ID FC-AP23Z
3' end seq. 
>FC-AP23Z.Seq
----------AAACTGTTAAATCAAAACCAACCAAAGGTAAAGCTGCCACCACCACCTCT
ACCACCGTTCAAGAGGTCGTCCCATGTTTCTTTAGCACCTTTGTCTCACCAAACCAAGAT
CCAACCAGTGATGAAGAAGCTGATGAAATCATGTACATCCAATACCAAATTATCGCCAAA
TTAAAGGATATCGTTATCCCAGAAGCCGTTAACTTCTTTTTAGGTCGTGCTTCAGATGCC
GAAGAAAACGATTATGACTTTGGTGAAGATTTCGAAGATGAAGAAGGTGAAGATGATGAT
GAAGAAGATGATGAAGAAGAACAAACCATTAAAAAACCATCAGGTAAAGGTAAAGCTCAA
CCACAACAACCACAAGATTGTAAACAACAATAAATTTAATGGTTGAAAAAAAAAAAAGAA
AAAAAAATATGTTATACTTTTATCATTGAAAAAAAAAAAAAAAAACCTTTTAAAAAAAAA
AT
Length of 3' end seq. 472
Connected seq. ID FC-AP23P
Connected seq. 
>FC-AP23P.Seq
CAAATACATAATCTCTTTTTTGAAAATGTCCGAAAATAACGAAATTGAAATGGAACTCCC
ATTTGACTCATCTGCAATTACTTCAACAGAAGTTTTAGACAGAGTTAATGCTTTACTCAC
TCTCCAAGATACACAAAATGAATTAACGGAACAAATGGAAAAAGAAATTTTAGAAATTGA
AAAGAAATATTTAAAAAAATTCCAACCACTCGCAGAAAAGAGATTTGAAATTGTATCAGG
TAAAGTTGAACCAACCAAAGAAGATCAACAATGTAAAGCACCAATTCAAGTTGAAAACCT
TAAATCTGTTCCAACCGATAAAGGTATTCCAAAGTTCTGGTTACATGTCTTACAAAACAC
CGAAGTCAAAGATATCATTGAAGAATGTGATATTGAAGCTTTAGAGTATTTAGTTGATAT
TAAAATCGTTCAAGTCGGTGACGCACAAGACTACTCTTTAGATTTCCACTTTAGTGATAA
TCCATTCTTCACCAACACTGTCATCTCCAAAACCG----------AAACTGTTAAATCAA
AACCAACCAAAGGTAAAGCTGCCACCACCACCTCTACCACCGTTCAAGAGGTCGTCCCAT
GTTTCTTTAGCACCTTTGTCTCACCAAACCAAGATCCAACCAGTGATGAAGAAGCTGATG
AAATCATGTACATCCAATACCAAATTATCGCCAAATTAAAGGATATCGTTATCCCAGAAG
CCGTTAACTTCTTTTTAGGTCGTGCTTCAGATGCCGAAGAAAACGATTATGACTTTGGTG
AAGATTTCGAAGATGAAGAAGGTGAAGATGATGATGAAGAAGATGATGAAGAAGAACAAA
CCATTAAAAAACCATCAGGTAAAGGTAAAGCTCAACCACAACAACCACAAGATTGTAAAC
AACAATAAATTTAATGGTTGAAAAAAAAAAAAGAAAAAAAAATATGTTATACTTTTATCA
TTGAAAAAAAAAAAAAAAAACCTTTTAAAAAAAAAAT
Length of connected seq. 987
Full length Seq ID -
Full length Seq. -
Length of full length seq. -