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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
FC-AP22
Library FC
(Link to library)
Clone ID FC-AP22
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15141-1
Original site URL
Representative seq. ID FC-AP22F
(Link to Original site)
Representative DNA sequence 
>FC-AP22 (FC-AP22Q) /CSM/FC/FC-AP/FC-AP22Q.Seq.d/
ACCAGCTGATGTTTGTACTGCATTCTCTTTGGATGTTCCTGTCAATCAATTATTGAAAAC
CAATGAAACTACAGTTTTTGAGTTTACAGGTTCAAATTTAGGTTGGGATTCTGATATTGA
ATCAACTCAAGCAAATGTTGAATTAGCAATCATTGAACCAAATAAGAAAATTAAGATTAC
TATTCCACCAGGTGCTGGTATTCAAAATGCAACTTTAAAATTTGGAAGTAATTTTTCAAT
TGGAAGTTATTTTAAATTATGANTTTATGGTCCAACAATCGATTCATACTATGTTTCAAG
GGATCTGGTATCTTTTTXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1997. 4. 4
Translated Amino Acid sequence 
qlmfvlhslwmflsiny*kpmklqflslqvqi*vgililnqlkqmln*qslnqirklrll
fhqvlvfkmql*NLEVIFQLEVILNYXFMVQQSIHTMFQGIWYLF---

---KKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
ts*clycilfgcscqsiienq*nysf*vyrfkfrlgf*y*insskc*isnh*tk*en*dy
ystrcwyskcnfkiwk*ffnwklf*imxlwsnnrfilcfkgsgif---

---KKKKKKKK

Frame B:
padvctafsldvpvnqllktnettvfeftgsnlgwdsdiestqanvelaiiepnkkikit
ippgagiqnatlkfgsnfsigsyfkl*xygptidsyyvsrdlvsf---

---KKKKKKKK

Frame C:
qlmfvlhslwmflsiny*kpmklqflslqvqi*vgililnqlkqmln*qslnqirklrll
fhqvlvfkmql*NLEVIFQLEVILNYXFMVQQSIHTMFQGIWYLF---

---KKKKKKKK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FC-AP22 (FC-AP22Q) /CSM/FC/FC-AP/FC-AP22Q.Seq.d/                      622   e-178
SSK295 (SSK295Q) /CSM/SS/SSK2-D/SSK295Q.Seq.d/                         40   0.022
SSJ873 (SSJ873Q) /CSM/SS/SSJ8-D/SSJ873Q.Seq.d/                         40   0.022
SSI673 (SSI673Q) /CSM/SS/SSI6-D/SSI673Q.Seq.d/                         40   0.022
SSI261 (SSI261Q) /CSM/SS/SSI2-C/SSI261Q.Seq.d/                         40   0.022
SSH870 (SSH870Q) /CSM/SS/SSH8-C/SSH870Q.Seq.d/                         40   0.022
SSG759 (SSG759Q) /CSM/SS/SSG7-C/SSG759Q.Seq.d/                         40   0.022
SSF810 (SSF810Q) /CSM/SS/SSF8-A/SSF810Q.Seq.d/                         40   0.022
SSD412 (SSD412Q) /CSM/SS/SSD4-A/SSD412Q.Seq.d/                         40   0.022
SSB226 (SSB226Q) /CSM/SS/SSB2-B/SSB226Q.Seq.d/                         40   0.022
own update 2001. 8.26
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.   480  e-146  4
AG031320|AG031320.1 Pan troglodytes DNA, clone: PTB-005D14.R.     44  1.1  1
BZ605639|BZ605639.1 WHABH06TR Human MCF7 breast cancer cell line library (MCF7_1) Homo sapiens genomic clone MCF7_1-8B12, DNA sequence.    44  1.1  1
AC012909|AC012909.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    44  1.1  1
AC004114|AC004114.1 Drosophila melanogaster, chromosome X, region 8E3-8E4, P1 clone DS05468, complete sequence.    44  1.1  1
AC005826|AC005826.1 Homo sapiens clone UWGC:rg041a03 from 7p14-15, complete sequence.    36  1.6  6
BZ309842|BZ309842.1 ic12b03.b1 WGS-ZmaysF (JM107 adapted methyl filtered) Zea mays genomic clone ic12b03 5', DNA sequence.    40  1.7  2
AC006379|AC006379.2 Homo sapiens BAC clone RP11-456N16 from 7p15.1-p13, complete sequence.    36  2.7  6
AX356406|AX356406.1 Sequence 40 from Patent WO0181622.            42  4.2  1
AX279986|AX279986.1 Sequence 8 from Patent WO0177378.             42  4.2  1
dna update 2003. 7.11
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115599_1(AC115599|pid:none) Dictyostelium discoideum chromosom...   180   1e-44
AC116984_31(AC116984|pid:none) Dictyostelium discoideum chromoso...    41   0.014
AB016609_1(AB016609|pid:none) Dictyostelium discoideum gene for ...    39   0.069
AY457635_2(AY457635|pid:none) Porcine reproductive and respirato...    33   2.9
BX548174_616(BX548174|pid:none) Prochlorococcus marinus MED4 com...    32   4.9
CU638743_272(CU638743|pid:none) Podospora anserina genomic DNA c...    32   4.9
EF568108_108(EF568108|pid:none) Glossina pallidipes salivary gla...    32   6.4
AM180088_2773(AM180088|pid:none) Haloquadratum walsbyi DSM 16790...    32   8.4
protein update 2009. 4.13
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.20  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: peroxisomal

>> prediction for FC-AP22 is nuc
5' end seq. ID FC-AP22F
5' end seq. 
>FC-AP22F.Seq
ACCAGCTGATGTTTGTACTGCATTCTCTTTGGATGTTCCTGTCAATCAATTATTGAAAAC
CAATGAAACTACAGTTTTTGAGTTTACAGGTTCAAATTTAGGTTGGGATTCTGATATTGA
ATCAACTCAAGCAAATGTTGAATTAGCAATCATTGAACCAAATAAGAAAATTAAGATTAC
TATTCCACCAGGTGCTGGTATTCAAAATGCAACTTTAAAATTTGGAAGTAATTTTTCAAT
TGGAAGTTATTTTAAATTATGANTTTATGGTCCAACAATCGATTCATACTATGTTTCAAG
GGATCTGGTATCTTTTT----------
Length of 5' end seq. 317
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -