>FC-AP17 (FC-AP17Q) /CSM/FC/FC-AP/FC-AP17Q.Seq.d/
XXXXXXXXXXGATTTAACTGGTTACATTACTGAAGGTCAAATTTTCATTGATCGTCAAAT
CAATAACAGACAAATCTACCCACCAATCAATGTATTACCATCACTTTCTCGTCTTATGAA
ATCCGCCATTGGTGACGACATGACCCGTGGCGATCACTCTGAAGTCTCAAATCAAATGTA
TGCCAACTATGCCATCGGTAAAGATGTCCAAGCTATGAAAGCTGTCGTTGGTGAGGAAGC
ACTTTCTTCTGAAGATAAACTCTACTTAGAATTTTTAGAACGTTTCGAATCTAGCTTTGT
CGGTCAAAACCATTATGAAAATCGTGATATCTTTAATTCATTGGATCTTGGTTGGTCTTT
ATTAAGAACTTTCCCAAGCAATCTCCTCAAACGTATCACTGAAAAAACTATTAAACAATA
CTATTCACGTTCATCAAAGGGTACTGTAGATTCAACTAACTAAATTTTAAAAAGAAAAAA
ATATAAATCAAAAAAAAAAAAAATAAAATAAAATCTAAAAATAAAATAAAATAAAAAAAA
AAATTTTAAAAATAAA

---LTGYITEGQIFIDRQINNRQIYPPINVLPSLSRLMKSAIGDDMTRGDHSEVSNQMYA
NYAIGKDVQAMKAVVGEEALSSEDKLYLEFLERFESSFVGQNHYENRDIFNSLDLGWSLL
RTFPSNLLKRITEKTIKQYYSRSSKGTVDSTN*ilkrkkykskkkkik*nlkik*nkkkn
fknk

Frame A:
---i*lvtllkvkfslivksitdksthqsmyyhhflvl*npplvtt*pvaitlksqikcm
ptmpsvkmskl*klslvrkhfllkinst*nf*nvsnlalsvktimkivislihwilvgly
*elsqaissnvslkkllnntihvhqrvl*iqltkf*kekninqkkkk*nki*k*nkikkk
ilki


Frame B:
---fnwlhy*rsnfh*ssnq*qtnlptnqcititfssyeirhw*rhdpwrsl*slksnvc
qlchr*rcpsyescrw*gstff*r*tllrifrtfri*lcrskpl*ks*yl*figswlvfi
knfpkqspqtyh*kny*tilftfikgycrfn*lnfkkkki*ikkkknkiksknkik*kkk
f*k*


Frame C:
---LTGYITEGQIFIDRQINNRQIYPPINVLPSLSRLMKSAIGDDMTRGDHSEVSNQMYA
NYAIGKDVQAMKAVVGEEALSSEDKLYLEFLERFESSFVGQNHYENRDIFNSLDLGWSLL
RTFPSNLLKRITEKTIKQYYSRSSKGTVDSTN*ilkrkkykskkkkik*nlkik*nkkkn
fknk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFF339 (VFF339Q) /CSM/VF/VFF3-B/VFF339Q.Seq.d/                        906   0.0
VFD313 (VFD313Q) /CSM/VF/VFD3-A/VFD313Q.Seq.d/                        906   0.0
SLH888 (SLH888Q) /CSM/SL/SLH8-D/SLH888Q.Seq.d/                        906   0.0
SLC323 (SLC323Q) /CSM/SL/SLC3-A/SLC323Q.Seq.d/                        906   0.0
SLB692 (SLB692Q) /CSM/SL/SLB6-D/SLB692Q.Seq.d/                        906   0.0
SLB190 (SLB190Q) /CSM/SL/SLB1-D/SLB190Q.Seq.d/                        906   0.0
SFK761 (SFK761Q) /CSM/SF/SFK7-C/SFK761Q.Seq.d/                        906   0.0
SFJ582 (SFJ582Q) /CSM/SF/SFJ5-D/SFJ582Q.Seq.d/                        906   0.0
FC-AP17 (FC-AP17Q) /CSM/FC/FC-AP/FC-AP17Q.Seq.d/                      906   0.0
FC-AI21 (FC-AI21Q) /CSM/FC/FC-AI/FC-AI21Q.Seq.d/                      906   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***.   908  0.0  1
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.   908  0.0  1
U63317|U63317.1 Dictyostelium discoideum vacuolar H+ ATPase B subunit (dvacB) mRNA, partial cds.   815  0.0  1
BI703972|BI703972.1 kt46e07.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:VATB_CAEEL Q19626 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT B ;, mRNA sequence.   121  9e-24  1
BI703973|BI703973.1 kt46f03.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:VATB_CAEEL Q19626 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT B ;, mRNA sequence.   121  9e-24  1
BI096120|BI096120.1 PIP2F_D05 Sugar Beet germination cDNA library Beta vulgaris cDNA 5' similar to vacuolar ATP synthase, mRNA sequence.    86  4e-22  3
BQ588588|BQ588588.1 E012562-024-015-P13-SP6 MPIZ-ADIS-024-storage root Beta vulgaris cDNA clone 024-015-P13 5-PRIME, mRNA sequence.    90  1e-21  2
BU724534|BU724534.1 SJMBIB09 SJM Schistosoma japonicum cDNA, mRNA sequence.    80  8e-20  2
BE859184|BE859184.1 SsS0499 Suaeda salsa ZAP cDNA library Suaeda maritima subsp. salsa cDNA similar to vacuolar ATPase B subunit, mRNA sequence.    78  8e-18  2
BQ407100|BQ407100.1 GA__Ed0102G10f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0102G10f, mRNA sequence.    84  9e-18  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NU1) RecName: Full=V-type proton ATPase subunit B;          ...   300   2e-80
U63317_1(U63317|pid:none) Dictyostelium discoideum vacuolar H+ A...   285   5e-76
(Q38681) RecName: Full=V-type proton ATPase subunit B 1;        ...   225   7e-58
AP002901_17(AP002901|pid:none) Oryza sativa Japonica Group genom...   223   2e-57
AB024277_1(AB024277|pid:none) Citrus unshiu mRNA for vacuolar H+...   223   3e-57
AJ438590_1(AJ438590|pid:none) Mesembryanthemum crystallinum mRNA...   222   4e-57
EF153483_1(EF153483|pid:none) Medicago truncatula vacuolar H+-AT...   221   7e-57
AK176408_1(AK176408|pid:none) Arabidopsis thaliana mRNA for vacu...   221   7e-57
(P11574) RecName: Full=V-type proton ATPase subunit B;          ...   221   7e-57
AK222158_1(AK222158|pid:none) Arabidopsis thaliana mRNA for vacu...   221   7e-57

 psg: 0.75  gvh: 0.47  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for FC-AP17 is cyt

>FC-AP17Z.Seq
----------GATTTAACTGGTTACATTACTGAAGGTCAAATTTTCATTGATCGTCAAAT
CAATAACAGACAAATCTACCCACCAATCAATGTATTACCATCACTTTCTCGTCTTATGAA
ATCCGCCATTGGTGACGACATGACCCGTGGCGATCACTCTGAAGTCTCAAATCAAATGTA
TGCCAACTATGCCATCGGTAAAGATGTCCAAGCTATGAAAGCTGTCGTTGGTGAGGAAGC
ACTTTCTTCTGAAGATAAACTCTACTTAGAATTTTTAGAACGTTTCGAATCTAGCTTTGT
CGGTCAAAACCATTATGAAAATCGTGATATCTTTAATTCATTGGATCTTGGTTGGTCTTT
ATTAAGAACTTTCCCAAGCAATCTCCTCAAACGTATCACTGAAAAAACTATTAAACAATA
CTATTCACGTTCATCAAAGGGTACTGTAGATTCAACTAACTAAATTTTAAAAAGAAAAAA
ATATAAATCAAAAAAAAAAAAAATAAAATAAAATCTAAAAATAAAATAAAATAAAAAAAA
AAATTTTAAAAATAAA