>FC-AP16 (FC-AP16Q) /CSM/FC/FC-AP/FC-AP16Q.Seq.d/
XXXXXXXXXXAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTG
GTAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCT
CAAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGA
CTAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTC
AAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGTAACGCTGATATTGTCAGACTCGT
CAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAAC
TGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCC
AGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGT
TAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAATTTT
TAAATAGATTTGTTTTCTAAAA

---RNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANVSRLNLLKLAPGGHLGRFIIWT
KSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIVTLILSDSSTLMKSKLPLEPAKSSSNVQL
PQFVVLTH*rtyvl*ln*tqppsqpvvlklnh*nqkvsklakrin*eln*llplstnkfl
nrfvf*

Frame A:
---RNRRYKVRKGPLVVVSGKTTVSQALRNIPGVEVANVSRLNLLKLAPGGHLGRFIIWT
KSAFEQLDSTFGTFAKSSAQKKGYTLPRPMIVTLILSDSSTLMKSKLPLEPAKSSSNVQL
PQFVVLTH*rtyvl*ln*tqppsqpvvlklnh*nqkvsklakrin*eln*llplstnkfl
nrfvf*


Frame B:
---etdvtksvkvh*ssslvrlpspkpyvtsqvlklptsqdsty*n*hqvvt*vdsssgl
nplsnn*tqplvplpnhllkrkvtlshvq*l*r*ycqtrql**npscr*sqqsrrqtsnc
psssf*pikeltcyd*ikpsrrlnpsyss*iikikryqs*qkesiks*iscchfqpinf*
idlfsk


Frame C:
---kqtlqsp*rsisrrlw*dyrlpslt*hprc*scqrlktqlikistrwslr*ihhld*
irfrtirlnlwylcqiicskerlhsptsndcnadivrlvnsdeiqaavraskvvvkrpta
pvrrsnplknlramiklnpaavstrrtqvkslkskgikvskknqlraklvaatfnq*ifk
*icflk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE563 (SLE563Q) /CSM/SL/SLE5-C/SLE563Q.Seq.d/                       1094   0.0
SLB401 (SLB401Q) /CSM/SL/SLB4-A/SLB401Q.Seq.d/                       1094   0.0
FC-AP16 (FC-AP16Q) /CSM/FC/FC-AP/FC-AP16Q.Seq.d/                     1094   0.0
SLB470 (SLB470Q) /CSM/SL/SLB4-C/SLB470Q.Seq.d/                       1090   0.0
SLB256 (SLB256Q) /CSM/SL/SLB2-C/SLB256Q.Seq.d/                       1088   0.0
FCL-AD07 (FCL-AD07Q) /CSM/FCL/FCL-AD/FCL-AD07Q.Seq.d/                1088   0.0
SLG503 (SLG503Q) /CSM/SL/SLG5-A/SLG503Q.Seq.d/                       1086   0.0
SLB307 (SLB307Q) /CSM/SL/SLB3-A/SLB307Q.Seq.d/                       1086   0.0
SLG768 (SLG768Q) /CSM/SL/SLG7-C/SLG768Q.Seq.d/                       1080   0.0
SLG132 (SLG132Q) /CSM/SL/SLG1-B/SLG132Q.Seq.d/                       1080   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.   559  0.0  2
CD430805|CD430805.1 ETH1_5_H12.b1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_5_H12_A002 3', mRNA sequence.    64  2e-06  1
AL400104|AL400104.1 T3 end of clone AS0AA019E05 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    48  2e-04  2
AC126086|AC126086.4 Rattus norvegicus clone CH230-135I8, WORKING DRAFT SEQUENCE, 2 unordered pieces.    46  0.45  1
AC126066|AC126066.4 Rattus norvegicus clone CH230-50D24, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.45  1
AC125601|AC125601.2 Rattus norvegicus clone CH230-10H9, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  1.8  1
AC140748|AC140748.4 Rattus norvegicus clone CH230-137J8, WORKING DRAFT SEQUENCE, 32 unordered pieces.    44  1.8  1
BU691651|BU691651.1 JM01028F01 JM01 Ipomoea batatas cDNA, mRNA sequence.    44  1.8  1
BQ852594|BQ852594.1 QGB18H05.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB18H05, mRNA sequence.    44  1.8  1
BH974977|BH974977.1 odi43a11.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44  1.8  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000595_105(CP000595|pid:none) Ostreococcus lucimarinus CCE9901...   114   2e-33
AK060711_1(AK060711|pid:none) Oryza sativa Japonica Group cDNA c...   114   2e-30
BT063074_1(BT063074|pid:none) Zea mays full-length cDNA clone ZM...   111   4e-30
S41640(S41640;S34289)ribosomal protein L4.e - fission yeast (Sch...   110   2e-29
AB071329_1(AB071329|pid:none) Paramecium caudatum mRNA for ribos...   108   4e-29
EF676106_1(EF676106|pid:none) Picea sitchensis clone WS02710_D09...   126   4e-28
EF147296_1(EF147296|pid:none) Populus trichocarpa clone WS0122_F...   124   2e-27
AC123596_24(AC123596|pid:none) Medicago truncatula clone mth1-17...   124   2e-27
AC148756_18(AC148756|pid:none) Medicago truncatula clone mth2-22...   124   2e-27
AB236838_1(AB236838|pid:none) Trifolium pratense RNA for putativ...   123   3e-27

 psg: 0.89  gvh: 0.60  alm: 0.46  top: 0.40  tms: 0.00  mit: 0.46  mip: 0.09
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 20.0 %: extracellular, including cell wall
	 16.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for FC-AP16 is mit

>FC-AP16Z.Seq
----------AAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTG
GTAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCT
CAAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGA
CTAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTC
AAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGTAACGCTGATATTGTCAGACTCGT
CAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAAC
TGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCC
AGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGT
TAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAATTTT
TAAATAGATTTGTTTTCTAAAA